Analysis of interatomic Contacts of Structural Units in PDB entry:
8YBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YBR entry

There are 3 chains in PDB entry 8YBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11ARG 664
B
 THR 11ARG 664
C
 THR 11ARG 664
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 8YBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 36Right-handed alpha
Helix 2
AA2
A
36 55Right-handed alpha
Helix 3
AA3
A
55 75Right-handed alpha
Helix 4
AA4
A
76 81Right-handed 310
Helix 5
AA5
A
93 103Right-handed alpha
Helix 6
AA6
A
108 114Right-handed alpha
Helix 7
AA7
A
115 124Right-handed alpha
Helix 8
AA8
A
132 147Right-handed alpha
Helix 9
AA9
A
148 168Right-handed alpha
Helix 10
AB1
A
174 178Right-handed 310
Helix 11
AB2
A
179 184Right-handed alpha
Helix 12
AB3
A
185 189Right-handed 310
Helix 13
AB4
A
191 196Right-handed alpha
Helix 14
AB5
A
197 226Right-handed alpha
Helix 15
AB6
A
231 251Right-handed alpha
Helix 16
AB7
A
260 279Right-handed alpha
Helix 17
AB8
A
281 304Right-handed alpha
Helix 18
AB9
A
320 340Right-handed alpha
Helix 19
AC1
A
347 356Right-handed alpha
Helix 20
AC2
A
357 380Right-handed alpha
Helix 21
AC3
A
383 393Right-handed alpha
Helix 22
AC4
A
396 403Right-handed alpha
Helix 23
AC5
A
407 427Right-handed alpha
Helix 24
AC6
A
428 437Right-handed alpha
Helix 25
AC7
A
452 468Right-handed alpha
Helix 26
AC8
A
471 484Right-handed alpha
Helix 27
AC9
A
486 514Right-handed alpha
Helix 28
AD1
A
521 525Right-handed 310
Helix 29
AD2
A
528 533Right-handed alpha
Helix 30
AD3
A
534 536Right-handed 310
Helix 31
AD4
A
539 548Right-handed alpha
Helix 32
AD5
A
551 564Right-handed alpha
Helix 33
AD6
A
604 608Right-handed 310
Helix 34
AD7
A
641 664Right-handed alpha
Helix 35
AD8
B
15 36Right-handed alpha
Helix 36
AD9
B
36 55Right-handed alpha
Helix 37
AE1
B
55 75Right-handed alpha
Helix 38
AE2
B
76 81Right-handed 310
Helix 39
AE3
B
93 103Right-handed alpha
Helix 40
AE4
B
108 114Right-handed alpha
Helix 41
AE5
B
115 124Right-handed alpha
Helix 42
AE6
B
132 147Right-handed alpha
Helix 43
AE7
B
148 168Right-handed alpha
Helix 44
AE8
B
174 178Right-handed 310
Helix 45
AE9
B
179 184Right-handed alpha
Helix 46
AF1
B
185 189Right-handed 310
Helix 47
AF2
B
191 196Right-handed alpha
Helix 48
AF3
B
197 226Right-handed alpha
Helix 49
AF4
B
231 251Right-handed alpha
Helix 50
AF5
B
260 279Right-handed alpha
Helix 51
AF6
B
281 304Right-handed alpha
Helix 52
AF7
B
320 340Right-handed alpha
Helix 53
AF8
B
347 356Right-handed alpha
Helix 54
AF9
B
357 380Right-handed alpha
Helix 55
AG1
B
383 393Right-handed alpha
Helix 56
AG2
B
396 403Right-handed alpha
Helix 57
AG3
B
407 427Right-handed alpha
Helix 58
AG4
B
428 437Right-handed alpha
Helix 59
AG5
B
452 468Right-handed alpha
Helix 60
AG6
B
471 484Right-handed alpha
Helix 61
AG7
B
486 514Right-handed alpha
Helix 62
AG8
B
521 525Right-handed 310
Helix 63
AG9
B
528 533Right-handed alpha
Helix 64
AH1
B
534 536Right-handed 310
Helix 65
AH2
B
539 548Right-handed alpha
Helix 66
AH3
B
551 564Right-handed alpha
Helix 67
AH4
B
604 608Right-handed 310
Helix 68
AH5
B
641 664Right-handed alpha
Helix 69
AH6
C
15 36Right-handed alpha
Helix 70
AH7
C
36 55Right-handed alpha
Helix 71
AH8
C
55 75Right-handed alpha
Helix 72
AH9
C
76 81Right-handed 310
Helix 73
AI1
C
93 103Right-handed alpha
Helix 74
AI2
C
108 114Right-handed alpha
Helix 75
AI3
C
115 124Right-handed alpha
Helix 76
AI4
C
132 147Right-handed alpha
Helix 77
AI5
C
148 168Right-handed alpha
Helix 78
AI6
C
174 178Right-handed 310
Helix 79
AI7
C
179 184Right-handed alpha
Helix 80
AI8
C
185 189Right-handed 310
Helix 81
AI9
C
191 196Right-handed alpha
Helix 82
AJ1
C
197 226Right-handed alpha
Helix 83
AJ2
C
231 251Right-handed alpha
Helix 84
AJ3
C
260 279Right-handed alpha
Helix 85
AJ4
C
281 304Right-handed alpha
Helix 86
AJ5
C
320 340Right-handed alpha
Helix 87
AJ6
C
347 356Right-handed alpha
Helix 88
AJ7
C
357 380Right-handed alpha
Helix 89
AJ8
C
383 393Right-handed alpha
Helix 90
AJ9
C
396 403Right-handed alpha
Helix 91
AK1
C
407 427Right-handed alpha
Helix 92
AK2
C
428 437Right-handed alpha
Helix 93
AK3
C
452 468Right-handed alpha
Helix 94
AK4
C
471 484Right-handed alpha
Helix 95
AK5
C
486 514Right-handed alpha
Helix 96
AK6
C
521 525Right-handed 310
Helix 97
AK7
C
528 533Right-handed alpha
Helix 98
AK8
C
534 536Right-handed 310
Helix 99
AK9
C
539 548Right-handed alpha
Helix 100
AL1
C
551 564Right-handed alpha
Helix 101
AL2
C
604 608Right-handed 310
Helix 102
AL3
C
641 664Right-handed alpha
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There are 7 sheets in PDB entry 8YBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
439 440anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 582first strand
Strand 2
A
594 601anti-parallel
Strand 3
A
621 627anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
439 440anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
568 569first strand
Strand 2
B
584 585anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
580 582first strand
Strand 2
B
594 601anti-parallel
Strand 3
B
621 627anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
439 440anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
580 582first strand
Strand 2
C
594 601anti-parallel
Strand 3
C
621 627anti-parallel
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