Analysis of interatomic Contacts of Structural Units in PDB entry:
8YBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YBY entry

There are 5 chains in PDB entry 8YBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 26	LYS 1149
A	GLU 1	CYS 230
C	SER 1	CYS 215
D	GLN 14	ASP 1146
E	GLN 14	ASP 1146

There are 64 helices in PDB entry 8YBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	294	304	Right-handed alpha
Helix 2	AA2	B	367	372	Right-handed alpha
Helix 3	AA3	B	405	410	Right-handed 310
Helix 4	AA4	B	737	743	Right-handed alpha
Helix 5	AA5	B	746	751	Right-handed alpha
Helix 6	AA6	B	758	780	Right-handed alpha
Helix 7	AA7	B	816	823	Right-handed alpha
Helix 8	AA8	B	866	884	Right-handed alpha
Helix 9	AA9	B	886	891	Right-handed alpha
Helix 10	AB1	B	897	907	Right-handed alpha
Helix 11	AB2	B	908	910	Right-handed 310
Helix 12	AB3	B	913	919	Right-handed alpha
Helix 13	AB4	B	919	940	Right-handed alpha
Helix 14	AB5	B	942	945	Right-handed 310
Helix 15	AB6	B	946	964	Right-handed alpha
Helix 16	AB7	B	965	968	Right-handed 310
Helix 17	AB8	B	977	984	Right-handed alpha
Helix 18	AB9	B	989	1035	Right-handed alpha
Helix 19	AC1	B	1141	1146	Right-handed alpha
Helix 20	AC2	A	141	148	Right-handed alpha
Helix 21	AC3	A	199	203	Right-handed 310
Helix 22	AC4	C	81	85	Right-handed 310
Helix 23	AC5	C	125	130	Right-handed alpha
Helix 24	AC6	C	185	190	Right-handed alpha
Helix 25	AC7	D	294	304	Right-handed alpha
Helix 26	AC8	D	383	390	Right-handed 310
Helix 27	AC9	D	405	410	Right-handed 310
Helix 28	AD1	D	416	422	Right-handed alpha
Helix 29	AD2	D	438	443	Right-handed alpha
Helix 30	AD3	D	502	505	Right-handed 310
Helix 31	AD4	D	737	743	Right-handed alpha
Helix 32	AD5	D	747	754	Right-handed alpha
Helix 33	AD6	D	757	783	Right-handed alpha
Helix 34	AD7	D	816	823	Right-handed alpha
Helix 35	AD8	D	852	856	Right-handed 310
Helix 36	AD9	D	866	882	Right-handed alpha
Helix 37	AE1	D	886	891	Right-handed 310
Helix 38	AE2	D	897	908	Right-handed alpha
Helix 39	AE3	D	912	918	Right-handed alpha
Helix 40	AE4	D	919	939	Right-handed alpha
Helix 41	AE5	D	945	954	Right-handed alpha
Helix 42	AE6	D	956	962	Right-handed alpha
Helix 43	AE7	D	976	984	Right-handed alpha
Helix 44	AE8	D	985	993	Right-handed alpha
Helix 45	AE9	D	993	998	Right-handed alpha
Helix 46	AF1	D	1000	1033	Right-handed alpha
Helix 47	AF2	D	1116	1120	Right-handed 310
Helix 48	AF3	E	294	299	Right-handed 310
Helix 49	AF4	E	502	505	Right-handed 310
Helix 50	AF5	E	746	751	Right-handed alpha
Helix 51	AF6	E	753	757	Right-handed 310
Helix 52	AF7	E	762	770	Right-handed alpha
Helix 53	AF8	E	770	780	Right-handed alpha
Helix 54	AF9	E	852	856	Right-handed 310
Helix 55	AG1	E	869	879	Right-handed alpha
Helix 56	AG2	E	900	905	Right-handed alpha
Helix 57	AG3	E	906	908	Right-handed 310
Helix 58	AG4	E	912	916	Right-handed 310
Helix 59	AG5	E	919	929	Right-handed alpha
Helix 60	AG6	E	949	962	Right-handed alpha
Helix 61	AG7	E	976	983	Right-handed alpha
Helix 62	AG8	E	999	1003	Right-handed 310
Helix 63	AG9	E	1004	1028	Right-handed alpha
Helix 64	AH1	E	1142	1146	Right-handed 310

There are 56 sheets in PDB entry 8YBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	265	267	anti-parallel
Strand 3	B	91	93	anti-parallel
Strand 4	B	191	193	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	240	anti-parallel
Strand 3	B	104	107	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	126	129	anti-parallel
Strand 3	B	169	170	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	317	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	643	645	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	539	542	parallel
Strand 3	B	547	553	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	573	577	anti-parallel
Strand 6	B	565	567	anti-parallel
Strand 7	D	42	43	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	357	first strand
Strand 2	B	393	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	435	437	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	380	first strand
Strand 2	B	431	432	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	692	695	parallel
Strand 3	B	670	674	anti-parallel
Strand 4	B	664	667	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	702	first strand
Strand 2	D	787	788	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	712	first strand
Strand 2	B	1075	1076	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	728	first strand
Strand 2	B	1059	1072	anti-parallel
Strand 3	B	1047	1053	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	735	736	first strand
Strand 2	B	858	859	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1081	1082	first strand
Strand 2	B	1133	1134	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1089	1090	first strand
Strand 2	B	1120	1121	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1105	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	70	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	121	125	parallel
Strand 3	A	91	98	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	46	47	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	A	155	159	anti-parallel
Strand 3	A	190	192	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	195	196	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	209	214	anti-parallel
Strand 3	A	219	224	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	98	102	parallel
Strand 3	C	87	95	anti-parallel
Strand 4	C	36	40	anti-parallel
Strand 5	C	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	98	102	parallel
Strand 3	C	87	95	anti-parallel
Strand 4	C	105	106	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	108	109	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	23	first strand
Strand 2	C	72	78	anti-parallel
Strand 3	C	66	69	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	180	184	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	176	177	anti-parallel
Strand 3	C	169	170	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	148	153	anti-parallel
Strand 3	C	196	201	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	30	first strand
Strand 2	D	61	66	anti-parallel
Strand 3	D	264	269	anti-parallel
Strand 4	D	90	96	anti-parallel
Strand 5	D	188	197	anti-parallel
Strand 6	D	207	208	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	30	first strand
Strand 2	D	61	66	anti-parallel
Strand 3	D	264	269	anti-parallel
Strand 4	D	90	96	anti-parallel
Strand 5	D	188	197	anti-parallel
Strand 6	D	200	205	anti-parallel
Strand 7	D	224	229	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	55	first strand
Strand 2	D	271	276	anti-parallel
Strand 3	D	289	290	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	171	first strand
Strand 2	D	126	144	anti-parallel
Strand 3	D	116	121	anti-parallel
Strand 4	D	103	107	anti-parallel
Strand 5	D	237	241	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	171	first strand
Strand 2	D	126	144	anti-parallel
Strand 3	D	245	246	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	314	first strand
Strand 2	D	595	599	anti-parallel
Strand 3	D	609	612	anti-parallel
Strand 4	D	649	651	anti-parallel
Strand 5	D	642	644	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	395	403	anti-parallel
Strand 3	D	507	514	anti-parallel
Strand 4	D	431	437	anti-parallel
Strand 5	D	376	380	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	492	494	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	488	489	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	539	543	first strand
Strand 2	D	546	554	anti-parallel
Strand 3	D	584	588	anti-parallel
Strand 4	D	573	577	anti-parallel
Strand 5	D	565	567	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	654	655	first strand
Strand 2	D	691	696	parallel
Strand 3	D	670	675	anti-parallel
Strand 4	D	664	667	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	715	721	first strand
Strand 2	D	1059	1072	anti-parallel
Strand 3	D	724	728	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	715	721	first strand
Strand 2	D	1059	1072	anti-parallel
Strand 3	D	1048	1056	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1094	1097	first strand
Strand 2	D	1102	1105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	30	first strand
Strand 2	E	61	64	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	E	237	246	anti-parallel
Strand 3	E	140	145	parallel
Strand 4	E	152	154	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	E	237	246	anti-parallel
Strand 3	E	101	106	anti-parallel
Strand 4	E	117	121	anti-parallel
Strand 5	E	126	131	anti-parallel
Strand 6	E	166	171	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	206	212	first strand
Strand 2	E	186	191	anti-parallel
Strand 3	E	90	96	anti-parallel
Strand 4	E	267	269	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	197	first strand
Strand 2	E	200	204	anti-parallel
Strand 3	E	225	229	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	313	first strand
Strand 2	E	596	599	anti-parallel
Strand 3	E	609	611	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	373	380	first strand
Strand 2	E	431	437	anti-parallel
Strand 3	E	507	516	anti-parallel
Strand 4	E	393	403	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	551	553	first strand
Strand 2	E	583	588	anti-parallel
Strand 3	E	573	578	anti-parallel
Strand 4	E	566	567	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	643	644	first strand
Strand 2	E	649	650	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	654	655	first strand
Strand 2	E	693	696	parallel
Strand 3	E	670	673	anti-parallel
Strand 4	E	664	667	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1081	1082	first strand
Strand 2	E	1087	1088	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1094	1097	first strand
Strand 2	E	1102	1105	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YBY