Analysis of interatomic Contacts of Structural Units in PDB entry:
8YCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YCM entry

There are 2 chains in PDB entry 8YCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 33THR 254
B
 SER 30THR 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8YCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 47Right-handed alpha
Helix 2
AA2
A
48 53Right-handed 310
Helix 3
AA3
A
62 69Right-handed alpha
Helix 4
AA4
A
71 85Right-handed alpha
Helix 5
AA5
A
105 116Right-handed alpha
Helix 6
AA6
A
121 132Right-handed alpha
Helix 7
AA7
A
133 136Right-handed 310
Helix 8
AA8
A
143 149Right-handed alpha
Helix 9
AA9
A
153 163Right-handed alpha
Helix 10
AB1
A
180 202Right-handed alpha
Helix 11
AB2
A
209 214Right-handed alpha
Helix 12
AB3
A
224 235Right-handed alpha
Helix 13
AB4
B
34 45Right-handed alpha
Helix 14
AB5
B
46 47Right-handed 310
Helix 15
AB6
B
48 53Right-handed 310
Helix 16
AB7
B
62 69Right-handed alpha
Helix 17
AB8
B
71 86Right-handed alpha
Helix 18
AB9
B
105 117Right-handed alpha
Helix 19
AC1
B
121 132Right-handed alpha
Helix 20
AC2
B
133 136Right-handed 310
Helix 21
AC3
B
143 149Right-handed alpha
Helix 22
AC4
B
153 163Right-handed alpha
Helix 23
AC5
B
180 202Right-handed alpha
Helix 24
AC6
B
209 214Right-handed alpha
Helix 25
AC7
B
224 235Right-handed alpha
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There are 6 sheets in PDB entry 8YCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
98 104anti-parallel
Strand 3
A
88 95anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 142first strand
Strand 2
A
173 176anti-parallel
Strand 3
A
166 170anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
246 250anti-parallel
Strand 3
A
239 243anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
100 104anti-parallel
Strand 3
B
88 92anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 142first strand
Strand 2
B
173 176anti-parallel
Strand 3
B
166 170anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
246 250anti-parallel
Strand 3
B
239 243anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il