Analysis of interatomic Contacts of Structural Units in PDB entry:
8YDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YDL entry

There are 2 chains in PDB entry 8YDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 46GLY 510
B
 SER 46GLY 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8YDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 97Right-handed alpha
Helix 2
AA2
A
109 120Right-handed alpha
Helix 3
AA3
A
123 132Right-handed alpha
Helix 4
AA4
A
156 163Right-handed alpha
Helix 5
AA5
A
163 169Right-handed alpha
Helix 6
AA6
A
177 200Right-handed alpha
Helix 7
AA7
A
214 224Right-handed alpha
Helix 8
AA8
A
228 237Right-handed alpha
Helix 9
AA9
A
238 245Right-handed alpha
Helix 10
AB1
A
315 340Right-handed alpha
Helix 11
AB2
A
351 361Right-handed alpha
Helix 12
AB3
A
365 374Right-handed alpha
Helix 13
AB4
A
398 405Right-handed alpha
Helix 14
AB5
A
406 411Right-handed alpha
Helix 15
AB6
A
419 442Right-handed alpha
Helix 16
AB7
A
456 465Right-handed alpha
Helix 17
AB8
A
470 479Right-handed alpha
Helix 18
AB9
A
480 487Right-handed alpha
Helix 19
AC1
B
73 97Right-handed alpha
Helix 20
AC2
B
109 119Right-handed alpha
Helix 21
AC3
B
123 132Right-handed alpha
Helix 22
AC4
B
156 163Right-handed alpha
Helix 23
AC5
B
163 169Right-handed alpha
Helix 24
AC6
B
177 200Right-handed alpha
Helix 25
AC7
B
214 223Right-handed alpha
Helix 26
AC8
B
228 237Right-handed alpha
Helix 27
AC9
B
238 245Right-handed alpha
Helix 28
AD1
B
315 340Right-handed alpha
Helix 29
AD2
B
351 362Right-handed alpha
Helix 30
AD3
B
365 374Right-handed alpha
Helix 31
AD4
B
398 405Right-handed alpha
Helix 32
AD5
B
406 411Right-handed alpha
Helix 33
AD6
B
419 442Right-handed alpha
Helix 34
AD7
B
456 465Right-handed alpha
Helix 35
AD8
B
470 479Right-handed alpha
Helix 36
AD9
B
480 487Right-handed alpha
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There are 4 sheets in PDB entry 8YDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 141first strand
Strand 2
A
147 155anti-parallel
Strand 3
A
49 60parallel
Strand 4
A
257 267anti-parallel
Strand 5
A
247 254anti-parallel
Strand 6
A
204 205anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 383first strand
Strand 2
A
389 397anti-parallel
Strand 3
A
293 302parallel
Strand 4
A
499 508anti-parallel
Strand 5
A
489 495anti-parallel
Strand 6
A
446 447anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 141first strand
Strand 2
B
147 155anti-parallel
Strand 3
B
49 60parallel
Strand 4
B
257 267anti-parallel
Strand 5
B
247 254anti-parallel
Strand 6
B
204 205anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
379 383first strand
Strand 2
B
389 397anti-parallel
Strand 3
B
293 302parallel
Strand 4
B
499 508anti-parallel
Strand 5
B
489 495anti-parallel
Strand 6
B
446 447anti-parallel
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