Analysis of interatomic Contacts of Structural Units in PDB entry:
8YE0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YE0 entry

There are 4 chains in PDB entry 8YE0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	ASN 290
B	LYS 11	ASN 290
C	MET 1	ASN 290
D	LYS 11	ASN 290

There are 60 helices in PDB entry 8YE0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	25	Right-handed alpha
Helix 2	AA2	A	32	43	Right-handed alpha
Helix 3	AA3	A	70	72	Right-handed 310
Helix 4	AA4	A	73	89	Right-handed alpha
Helix 5	AA5	A	98	106	Right-handed alpha
Helix 6	AA6	A	110	112	Right-handed 310
Helix 7	AA7	A	126	129	Right-handed 310
Helix 8	AA8	A	141	153	Right-handed alpha
Helix 9	AA9	A	157	162	Right-handed alpha
Helix 10	AB1	A	189	193	Right-handed alpha
Helix 11	AB2	A	194	205	Right-handed alpha
Helix 12	AB3	A	206	214	Right-handed alpha
Helix 13	AB4	A	238	245	Right-handed alpha
Helix 14	AB5	A	248	259	Right-handed alpha
Helix 15	AB6	A	273	277	Right-handed 310
Helix 16	AB7	B	12	25	Right-handed alpha
Helix 17	AB8	B	32	42	Right-handed alpha
Helix 18	AB9	B	70	72	Right-handed 310
Helix 19	AC1	B	73	89	Right-handed alpha
Helix 20	AC2	B	98	106	Right-handed alpha
Helix 21	AC3	B	110	112	Right-handed 310
Helix 22	AC4	B	126	129	Right-handed 310
Helix 23	AC5	B	141	153	Right-handed alpha
Helix 24	AC6	B	158	162	Right-handed 310
Helix 25	AC7	B	189	193	Right-handed alpha
Helix 26	AC8	B	194	205	Right-handed alpha
Helix 27	AC9	B	206	214	Right-handed alpha
Helix 28	AD1	B	238	245	Right-handed alpha
Helix 29	AD2	B	248	259	Right-handed alpha
Helix 30	AD3	B	273	276	Right-handed 310
Helix 31	AD4	C	6	26	Right-handed alpha
Helix 32	AD5	C	32	43	Right-handed alpha
Helix 33	AD6	C	70	72	Right-handed 310
Helix 34	AD7	C	73	89	Right-handed alpha
Helix 35	AD8	C	98	106	Right-handed alpha
Helix 36	AD9	C	110	112	Right-handed 310
Helix 37	AE1	C	126	129	Right-handed 310
Helix 38	AE2	C	141	153	Right-handed alpha
Helix 39	AE3	C	158	162	Right-handed 310
Helix 40	AE4	C	189	193	Right-handed alpha
Helix 41	AE5	C	194	202	Right-handed alpha
Helix 42	AE6	C	206	214	Right-handed alpha
Helix 43	AE7	C	238	245	Right-handed alpha
Helix 44	AE8	C	248	259	Right-handed alpha
Helix 45	AE9	C	272	277	Right-handed alpha
Helix 46	AF1	D	12	26	Right-handed alpha
Helix 47	AF2	D	32	42	Right-handed alpha
Helix 48	AF3	D	70	72	Right-handed 310
Helix 49	AF4	D	73	89	Right-handed alpha
Helix 50	AF5	D	98	106	Right-handed alpha
Helix 51	AF6	D	110	112	Right-handed 310
Helix 52	AF7	D	126	129	Right-handed 310
Helix 53	AF8	D	141	153	Right-handed alpha
Helix 54	AF9	D	157	161	Right-handed 310
Helix 55	AG1	D	189	193	Right-handed alpha
Helix 56	AG2	D	194	203	Right-handed alpha
Helix 57	AG3	D	206	212	Right-handed alpha
Helix 58	AG4	D	238	245	Right-handed alpha
Helix 59	AG5	D	248	256	Right-handed alpha
Helix 60	AG6	D	272	276	Right-handed alpha

There are 4 sheets in PDB entry 8YE0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	55	first strand
Strand 2	A	58	68	anti-parallel
Strand 3	A	114	122	anti-parallel
Strand 4	A	131	139	anti-parallel
Strand 5	A	166	174	anti-parallel
Strand 6	A	179	188	anti-parallel
Strand 7	A	216	224	anti-parallel
Strand 8	A	231	236	anti-parallel
Strand 9	A	263	271	anti-parallel
Strand 10	A	282	289	anti-parallel
Strand 11	A	46	55	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	55	first strand
Strand 2	B	58	68	anti-parallel
Strand 3	B	114	122	anti-parallel
Strand 4	B	131	139	anti-parallel
Strand 5	B	166	174	anti-parallel
Strand 6	B	179	188	anti-parallel
Strand 7	B	216	223	anti-parallel
Strand 8	B	231	236	anti-parallel
Strand 9	B	265	271	anti-parallel
Strand 10	B	282	288	anti-parallel
Strand 11	B	46	55	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	55	first strand
Strand 2	C	58	68	anti-parallel
Strand 3	C	114	122	anti-parallel
Strand 4	C	131	139	anti-parallel
Strand 5	C	166	174	anti-parallel
Strand 6	C	179	188	anti-parallel
Strand 7	C	216	224	anti-parallel
Strand 8	C	231	236	anti-parallel
Strand 9	C	263	271	anti-parallel
Strand 10	C	282	289	anti-parallel
Strand 11	C	46	55	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	55	first strand
Strand 2	D	58	68	anti-parallel
Strand 3	D	114	122	anti-parallel
Strand 4	D	131	139	anti-parallel
Strand 5	D	166	174	anti-parallel
Strand 6	D	179	188	anti-parallel
Strand 7	D	216	224	anti-parallel
Strand 8	D	231	236	anti-parallel
Strand 9	D	265	271	anti-parallel
Strand 10	D	282	288	anti-parallel
Strand 11	D	46	55	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YE0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YE0