Analysis of interatomic Contacts of Structural Units in PDB entry:
8YE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YE6 entry

There are 3 chains in PDB entry 8YE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 5LYS 92
A
 MET 1ASP 1368
C
 U 7 U 98
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 68 helices in PDB entry 8YE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
11 19Right-handed alpha
Helix 2
AA2
B
24 34Right-handed alpha
Helix 3
AA3
B
46 68Right-handed alpha
Helix 4
AA4
B
76 92Right-handed alpha
Helix 5
AA5
A
59 94Right-handed alpha
Helix 6
AA6
A
96 103Right-handed alpha
Helix 7
AA7
A
121 132Right-handed alpha
Helix 8
AA8
A
134 145Right-handed alpha
Helix 9
AA9
A
150 164Right-handed alpha
Helix 10
AB1
A
175 180Right-handed alpha
Helix 11
AB2
A
180 196Right-handed alpha
Helix 12
AB3
A
207 213Right-handed alpha
Helix 13
AB4
A
217 229Right-handed alpha
Helix 14
AB5
A
236 247Right-handed alpha
Helix 15
AB6
A
252 257Right-handed alpha
Helix 16
AB7
A
270 280Right-handed alpha
Helix 17
AB8
A
286 306Right-handed alpha
Helix 18
AB9
A
315 343Right-handed alpha
Helix 19
AC1
A
346 352Right-handed alpha
Helix 20
AC2
A
358 364Right-handed alpha
Helix 21
AC3
A
368 383Right-handed alpha
Helix 22
AC4
A
386 394Right-handed alpha
Helix 23
AC5
A
404 410Right-handed 310
Helix 24
AC6
A
411 426Right-handed alpha
Helix 25
AC7
A
430 436Right-handed alpha
Helix 26
AC8
A
436 446Right-handed alpha
Helix 27
AC9
A
477 482Right-handed alpha
Helix 28
AD1
A
483 496Right-handed alpha
Helix 29
AD2
A
512 525Right-handed alpha
Helix 30
AD3
A
541 552Right-handed alpha
Helix 31
AD4
A
560 567Right-handed alpha
Helix 32
AD5
A
591 602Right-handed alpha
Helix 33
AD6
A
603 608Right-handed alpha
Helix 34
AD7
A
612 626Right-handed alpha
Helix 35
AD8
A
628 636Right-handed alpha
Helix 36
AD9
A
637 638Right-handed 310
Helix 37
AE1
A
639 643Right-handed 310
Helix 38
AE2
A
645 652Right-handed alpha
Helix 39
AE3
A
664 669Right-handed alpha
Helix 40
AE4
A
678 685Right-handed alpha
Helix 41
AE5
A
693 698Right-handed alpha
Helix 42
AE6
A
703 712Right-handed alpha
Helix 43
AE7
A
719 727Right-handed alpha
Helix 44
AE8
A
730 751Right-handed alpha
Helix 45
AE9
A
775 792Right-handed alpha
Helix 46
AF1
A
794 799Right-handed alpha
Helix 47
AF2
A
808 817Right-handed alpha
Helix 48
AF3
A
832 836Right-handed 310
Helix 49
AF4
A
860 865Right-handed 310
Helix 50
AF5
A
873 879Right-handed alpha
Helix 51
AF6
A
879 889Right-handed alpha
Helix 52
AF7
A
893 901Right-handed alpha
Helix 53
AF8
A
909 922Right-handed alpha
Helix 54
AF9
A
926 940Right-handed alpha
Helix 55
AG1
A
960 970Right-handed alpha
Helix 56
AG2
A
981 1001Right-handed alpha
Helix 57
AG3
A
1078 1087Right-handed alpha
Helix 58
AG4
A
1170 1177Right-handed alpha
Helix 59
AG5
A
1177 1184Right-handed alpha
Helix 60
AG6
A
1191 1195Right-handed 310
Helix 61
AG7
A
1207 1209Right-handed 310
Helix 62
AG8
A
1229 1241Right-handed alpha
Helix 63
AG9
A
1248 1261Right-handed alpha
Helix 64
AH1
A
1264 1280Right-handed alpha
Helix 65
AH2
A
1283 1296Right-handed alpha
Helix 66
AH3
A
1301 1313Right-handed alpha
Helix 67
AH4
A
1340 1344Right-handed 310
Helix 68
AH5
A
1363 1365Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 8YE6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
15 22anti-parallel
Strand 3
A
48 52anti-parallel
Strand 4
A
1093 1096parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
1357 1361parallel
Strand 4
A
1346 1350anti-parallel
Strand 5
A
1202 1205anti-parallel
Strand 6
A
1211 1216anti-parallel
Strand 7
A
1219 1222anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 509first strand
Strand 2
A
659 663anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 530first strand
Strand 2
A
579 581anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 761first strand
Strand 2
A
954 957parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 840first strand
Strand 2
A
855 858anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1051first strand
Strand 2
A
1057 1059anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1065first strand
Strand 2
A
1072 1075anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1133 1134anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1157 1167first strand
Strand 2
A
1139 1150anti-parallel
Strand 3
A
1196 1198anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1325first strand
Strand 2
A
1330 1331anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il