Analysis of interatomic Contacts of Structural Units in PDB entry:
8YE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YE8 entry

There are 4 chains in PDB entry 8YE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1907PHE 2040
B
 THR 1909PHE 2040
C
 HIS 18ARG 19
C
 VAL 21ARG 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8YE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1911 1915Right-handed 310
Helix 2
AA2
A
1961 1968Right-handed alpha
Helix 3
AA3
B
1911 1915Right-handed 310
Helix 4
AA4
B
1961 1968Right-handed alpha
Helix 5
AA5
B
1976 1980Right-handed 310
Helix 6
AA6
B
2005 2009Right-handed 310
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There are 4 sheets in PDB entry 8YE8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1955 1960first strand
Strand 2
A
1943 1948anti-parallel
Strand 3
A
1930 1937anti-parallel
Strand 4
A
1996 2002anti-parallel
Strand 5
A
2015 2020anti-parallel
Strand 6
A
2025 2029anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1969 1970first strand
Strand 2
A
1920 1924anti-parallel
Strand 3
A
1930 1937anti-parallel
Strand 4
A
1996 2002anti-parallel
Strand 5
A
1985 1989anti-parallel
Strand 6
A
2033 2035anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1958 1960first strand
Strand 2
B
1943 1948anti-parallel
Strand 3
B
1930 1937anti-parallel
Strand 4
B
1996 2003anti-parallel
Strand 5
B
2015 2020anti-parallel
Strand 6
B
2025 2029anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1969 1970first strand
Strand 2
B
1920 1924anti-parallel
Strand 3
B
1930 1937anti-parallel
Strand 4
B
1996 2003anti-parallel
Strand 5
B
1985 1989anti-parallel
Strand 6
B
2033 2035anti-parallel
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