Analysis of interatomic Contacts of Structural Units in PDB entry:
8YE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YE9 entry

There are 3 chains in PDB entry 8YE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 1368
C
 U 7 U 98
B
 THR 13LYS 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 8YE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 94Right-handed alpha
Helix 2
AA2
A
107 111Right-handed 310
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
180 196Right-handed alpha
Helix 7
AA7
A
207 213Right-handed alpha
Helix 8
AA8
A
218 227Right-handed alpha
Helix 9
AA9
A
237 247Right-handed alpha
Helix 10
AB1
A
252 257Right-handed alpha
Helix 11
AB2
A
270 279Right-handed alpha
Helix 12
AB3
A
286 306Right-handed alpha
Helix 13
AB4
A
315 343Right-handed alpha
Helix 14
AB5
A
346 352Right-handed alpha
Helix 15
AB6
A
359 364Right-handed alpha
Helix 16
AB7
A
368 382Right-handed alpha
Helix 17
AB8
A
386 395Right-handed alpha
Helix 18
AB9
A
411 427Right-handed alpha
Helix 19
AC1
A
431 436Right-handed alpha
Helix 20
AC2
A
437 445Right-handed alpha
Helix 21
AC3
A
477 482Right-handed alpha
Helix 22
AC4
A
484 493Right-handed alpha
Helix 23
AC5
A
512 525Right-handed alpha
Helix 24
AC6
A
541 552Right-handed alpha
Helix 25
AC7
A
560 566Right-handed alpha
Helix 26
AC8
A
592 602Right-handed alpha
Helix 27
AC9
A
612 626Right-handed alpha
Helix 28
AD1
A
628 636Right-handed alpha
Helix 29
AD2
A
637 640Right-handed 310
Helix 30
AD3
A
644 652Right-handed alpha
Helix 31
AD4
A
663 669Right-handed alpha
Helix 32
AD5
A
678 685Right-handed alpha
Helix 33
AD6
A
692 698Right-handed alpha
Helix 34
AD7
A
703 711Right-handed alpha
Helix 35
AD8
A
719 726Right-handed alpha
Helix 36
AD9
A
730 751Right-handed alpha
Helix 37
AE1
A
775 792Right-handed alpha
Helix 38
AE2
A
804 807Right-handed 310
Helix 39
AE3
A
808 816Right-handed alpha
Helix 40
AE4
A
874 879Right-handed alpha
Helix 41
AE5
A
879 889Right-handed alpha
Helix 42
AE6
A
893 901Right-handed alpha
Helix 43
AE7
A
909 920Right-handed alpha
Helix 44
AE8
A
927 940Right-handed alpha
Helix 45
AE9
A
961 971Right-handed alpha
Helix 46
AF1
A
981 1001Right-handed alpha
Helix 47
AF2
A
1004 1009Right-handed alpha
Helix 48
AF3
A
1043 1047Right-handed 310
Helix 49
AF4
A
1078 1087Right-handed alpha
Helix 50
AF5
A
1171 1177Right-handed alpha
Helix 51
AF6
A
1177 1185Right-handed alpha
Helix 52
AF7
A
1207 1209Right-handed 310
Helix 53
AF8
A
1229 1241Right-handed alpha
Helix 54
AF9
A
1248 1262Right-handed alpha
Helix 55
AG1
A
1264 1280Right-handed alpha
Helix 56
AG2
A
1284 1296Right-handed alpha
Helix 57
AG3
A
1301 1311Right-handed alpha
Helix 58
AG4
A
1312 1315Right-handed 310
Helix 59
AG5
A
1340 1344Right-handed 310
Helix 60
AG6
B
20 33Right-handed alpha
Helix 61
AG7
B
41 54Right-handed alpha
Helix 62
AG8
B
63 77Right-handed alpha
Helix 63
AG9
B
84 92Right-handed alpha
Helix 64
AH1
B
93 98Right-handed alpha
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There are 7 sheets in PDB entry 8YE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
6 11anti-parallel
Strand 4
A
758 763parallel
Strand 5
A
954 957parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
1357 1361parallel
Strand 4
A
1346 1350anti-parallel
Strand 5
A
1202 1205anti-parallel
Strand 6
A
1211 1214anti-parallel
Strand 7
A
1220 1222anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 530first strand
Strand 2
A
579 581anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
837 840first strand
Strand 2
A
855 858anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1064 1065first strand
Strand 2
A
1072 1074anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1162 1167first strand
Strand 2
A
1139 1145anti-parallel
Strand 3
A
1196 1198anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1325first strand
Strand 2
A
1330 1331anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il