Analysis of interatomic Contacts of Structural Units in PDB entry:
8YEF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YEF entry

There are 7 chains in PDB entry 8YEF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	SER 120
B	ASP 1	LYS 107
C	LYS 12	SER 460
H	LYS 12	SER 460
I	LYS 12	SER 460
J	LYS 12	SER 460
K	LYS 12	SER 460

There are 50 helices in PDB entry 8YEF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	91	Right-handed 310
Helix 2	AA2	B	79	83	Right-handed 310
Helix 3	AA3	C	15	18	Right-handed 310
Helix 4	AA4	C	198	203	Right-handed alpha
Helix 5	AA5	C	210	215	Right-handed alpha
Helix 6	AA6	C	222	227	Right-handed alpha
Helix 7	AA7	C	313	315	Right-handed 310
Helix 8	AA8	C	344	346	Right-handed 310
Helix 9	AA9	C	372	383	Right-handed alpha
Helix 10	AB1	C	383	391	Right-handed alpha
Helix 11	AB2	C	427	431	Right-handed 310
Helix 12	AB3	C	450	459	Right-handed alpha
Helix 13	AB4	H	15	18	Right-handed 310
Helix 14	AB5	H	198	203	Right-handed alpha
Helix 15	AB6	H	222	229	Right-handed alpha
Helix 16	AB7	H	344	347	Right-handed 310
Helix 17	AB8	H	372	383	Right-handed alpha
Helix 18	AB9	H	384	391	Right-handed alpha
Helix 19	AC1	H	427	431	Right-handed 310
Helix 20	AC2	H	446	449	Right-handed 310
Helix 21	AC3	H	450	459	Right-handed alpha
Helix 22	AC4	I	15	18	Right-handed 310
Helix 23	AC5	I	198	203	Right-handed alpha
Helix 24	AC6	I	222	228	Right-handed alpha
Helix 25	AC7	I	313	315	Right-handed 310
Helix 26	AC8	I	372	383	Right-handed alpha
Helix 27	AC9	I	383	391	Right-handed alpha
Helix 28	AD1	I	427	431	Right-handed 310
Helix 29	AD2	I	446	449	Right-handed 310
Helix 30	AD3	I	450	459	Right-handed alpha
Helix 31	AD4	J	15	18	Right-handed 310
Helix 32	AD5	J	210	215	Right-handed alpha
Helix 33	AD6	J	222	228	Right-handed alpha
Helix 34	AD7	J	313	315	Right-handed 310
Helix 35	AD8	J	372	383	Right-handed alpha
Helix 36	AD9	J	383	391	Right-handed alpha
Helix 37	AE1	J	427	431	Right-handed 310
Helix 38	AE2	J	446	449	Right-handed 310
Helix 39	AE3	J	450	459	Right-handed alpha
Helix 40	AE4	K	15	19	Right-handed 310
Helix 41	AE5	K	198	203	Right-handed alpha
Helix 42	AE6	K	210	214	Right-handed 310
Helix 43	AE7	K	222	228	Right-handed alpha
Helix 44	AE8	K	313	315	Right-handed 310
Helix 45	AE9	K	344	346	Right-handed 310
Helix 46	AF1	K	372	383	Right-handed alpha
Helix 47	AF2	K	383	391	Right-handed alpha
Helix 48	AF3	K	427	431	Right-handed 310
Helix 49	AF4	K	446	449	Right-handed 310
Helix 50	AF5	K	450	459	Right-handed alpha

There are 44 sheets in PDB entry 8YEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	114	118	parallel
Strand 3	A	92	101	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	114	118	parallel
Strand 3	A	92	101	anti-parallel
Strand 4	A	106	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	70	76	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	49	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	301	first strand
Strand 2	C	86	97	anti-parallel
Strand 3	C	360	370	anti-parallel
Strand 4	C	20	30	anti-parallel
Strand 5	C	443	444	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	348	358	anti-parallel
Strand 3	C	331	336	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	285	first strand
Strand 2	C	237	251	anti-parallel
Strand 3	C	142	149	anti-parallel
Strand 4	C	317	324	anti-parallel
Strand 5	C	61	66	anti-parallel
Strand 6	C	435	438	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	285	first strand
Strand 2	C	237	251	anti-parallel
Strand 3	I	289	290	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	113	first strand
Strand 2	C	134	138	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	183	first strand
Strand 2	C	154	159	anti-parallel
Strand 3	C	218	221	anti-parallel
Strand 4	C	189	190	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	I	348	358	parallel
Strand 3	I	34	38	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	I	348	358	parallel
Strand 3	I	331	336	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	H	237	251	anti-parallel
Strand 3	H	281	285	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	118	first strand
Strand 2	H	237	251	anti-parallel
Strand 3	H	142	149	anti-parallel
Strand 4	H	317	324	anti-parallel
Strand 5	H	61	66	anti-parallel
Strand 6	H	435	438	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	30	first strand
Strand 2	H	361	369	anti-parallel
Strand 3	H	88	94	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	38	first strand
Strand 2	H	349	358	anti-parallel
Strand 3	H	331	335	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	38	first strand
Strand 2	H	349	358	anti-parallel
Strand 3	J	255	256	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	46	first strand
Strand 2	H	49	52	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	113	first strand
Strand 2	H	134	138	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	177	183	first strand
Strand 2	H	154	160	anti-parallel
Strand 3	H	220	221	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	289	290	first strand
Strand 2	J	237	251	anti-parallel
Strand 3	J	280	285	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	117	118	first strand
Strand 2	J	237	251	anti-parallel
Strand 3	J	142	149	anti-parallel
Strand 4	J	317	324	anti-parallel
Strand 5	J	61	66	anti-parallel
Strand 6	J	435	438	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	30	first strand
Strand 2	I	360	369	anti-parallel
Strand 3	I	88	97	anti-parallel
Strand 4	I	300	301	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	45	first strand
Strand 2	I	50	52	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	237	243	first strand
Strand 2	I	142	149	anti-parallel
Strand 3	I	317	324	anti-parallel
Strand 4	I	61	66	anti-parallel
Strand 5	I	435	438	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	107	113	first strand
Strand 2	I	134	139	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	117	118	first strand
Strand 2	I	245	251	anti-parallel
Strand 3	I	280	285	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	177	183	first strand
Strand 2	I	154	160	anti-parallel
Strand 3	I	220	221	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	255	256	first strand
Strand 2	K	348	353	parallel
Strand 3	K	331	336	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	20	30	first strand
Strand 2	J	360	370	anti-parallel
Strand 3	J	86	97	anti-parallel
Strand 4	J	300	301	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	38	first strand
Strand 2	J	348	358	anti-parallel
Strand 3	J	331	336	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	38	first strand
Strand 2	J	348	358	anti-parallel
Strand 3	K	255	256	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	44	45	first strand
Strand 2	J	50	52	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	108	113	first strand
Strand 2	J	134	138	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	154	159	first strand
Strand 2	J	178	183	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	289	290	first strand
Strand 2	K	238	252	anti-parallel
Strand 3	K	280	285	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	115	118	first strand
Strand 2	K	238	252	anti-parallel
Strand 3	K	142	149	anti-parallel
Strand 4	K	317	324	anti-parallel
Strand 5	K	61	66	anti-parallel
Strand 6	K	435	438	parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	30	first strand
Strand 2	K	361	370	anti-parallel
Strand 3	K	86	95	anti-parallel
Strand 4	K	300	301	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	34	37	first strand
Strand 2	K	355	358	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	46	first strand
Strand 2	K	49	52	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	108	113	first strand
Strand 2	K	134	138	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	154	160	first strand
Strand 2	K	177	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YEF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YEF