Analysis of interatomic Contacts of Structural Units in PDB entry:
8YEN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YEN entry

There are 2 chains in PDB entry 8YEN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7ARG 483
B
 PRO 7ARG 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8YEN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 75Right-handed alpha
Helix 2
AA2
A
75 93Right-handed alpha
Helix 3
AA3
A
93 106Right-handed alpha
Helix 4
AA4
A
108 128Right-handed alpha
Helix 5
AA5
A
162 177Right-handed alpha
Helix 6
AA6
A
190 200Right-handed alpha
Helix 7
AA7
A
217 224Right-handed alpha
Helix 8
AA8
A
236 247Right-handed alpha
Helix 9
AA9
A
271 285Right-handed alpha
Helix 10
AB1
A
286 289Right-handed 310
Helix 11
AB2
A
303 318Right-handed alpha
Helix 12
AB3
A
335 353Right-handed alpha
Helix 13
AB4
A
381 386Right-handed alpha
Helix 14
AB5
A
400 410Right-handed alpha
Helix 15
AB6
A
423 433Right-handed alpha
Helix 16
AB7
A
456 460Right-handed 310
Helix 17
AB8
A
465 473Right-handed alpha
Helix 18
AB9
B
53 74Right-handed alpha
Helix 19
AC1
B
75 93Right-handed alpha
Helix 20
AC2
B
93 106Right-handed alpha
Helix 21
AC3
B
108 128Right-handed alpha
Helix 22
AC4
B
162 177Right-handed alpha
Helix 23
AC5
B
190 200Right-handed alpha
Helix 24
AC6
B
217 224Right-handed alpha
Helix 25
AC7
B
236 247Right-handed alpha
Helix 26
AC8
B
271 285Right-handed alpha
Helix 27
AC9
B
286 289Right-handed 310
Helix 28
AD1
B
301 318Right-handed alpha
Helix 29
AD2
B
335 353Right-handed alpha
Helix 30
AD3
B
381 386Right-handed alpha
Helix 31
AD4
B
400 410Right-handed alpha
Helix 32
AD5
B
423 433Right-handed alpha
Helix 33
AD6
B
456 460Right-handed 310
Helix 34
AD7
B
466 471Right-handed alpha
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There are 8 sheets in PDB entry 8YEN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
27 29anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
45 51anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
142 150anti-parallel
Strand 3
A
474 482anti-parallel
Strand 4
B
438 441parallel
Strand 5
B
416 420parallel
Strand 6
B
263 266parallel
Strand 7
B
296 300parallel
Strand 8
B
392 398parallel
Strand 9
B
372 375parallel
Strand 10
B
354 357anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
180 184parallel
Strand 3
A
153 157parallel
Strand 4
A
230 234parallel
Strand 5
A
253 257parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
372 375anti-parallel
Strand 3
A
392 398parallel
Strand 4
A
296 300parallel
Strand 5
A
263 266parallel
Strand 6
A
416 420parallel
Strand 7
A
438 440parallel
Strand 8
B
474 482parallel
Strand 9
B
142 150anti-parallel
Strand 10
B
134 138anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
27 29anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 38first strand
Strand 2
B
45 51anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
180 184parallel
Strand 3
B
153 157parallel
Strand 4
B
230 234parallel
Strand 5
B
253 257parallel
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