Analysis of interatomic Contacts of Structural Units in PDB entry:
8YEO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YEO entry

There are 12 chains in PDB entry 8YEO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 255
J	MET 1	LYS 340
B	MET 1	LEU 175
I	LEU 12	LYS 335
C	U 1	G 60
T	G 6	C 53
D	LEU 12	GLU 334
E	LEU 12	GLN 333
F	LEU 12	GLU 334
G	LEU 12	GLU 334
H	LEU 12	GLU 334
N	G 9	A 19

There are 84 helices in PDB entry 8YEO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	45	Right-handed alpha
Helix 2	AA2	A	118	130	Right-handed alpha
Helix 3	AA3	A	164	169	Right-handed alpha
Helix 4	AA4	A	174	186	Right-handed alpha
Helix 5	AA5	J	2	9	Right-handed alpha
Helix 6	AA6	J	15	31	Right-handed alpha
Helix 7	AA7	J	83	86	Right-handed 310
Helix 8	AA8	J	87	93	Right-handed alpha
Helix 9	AA9	J	111	121	Right-handed alpha
Helix 10	AB1	J	124	134	Right-handed alpha
Helix 11	AB2	J	166	179	Right-handed alpha
Helix 12	AB3	J	191	198	Right-handed alpha
Helix 13	AB4	J	201	206	Right-handed alpha
Helix 14	AB5	J	217	221	Right-handed 310
Helix 15	AB6	J	223	230	Right-handed alpha
Helix 16	AB7	J	238	242	Right-handed 310
Helix 17	AB8	J	254	267	Right-handed alpha
Helix 18	AB9	J	282	293	Right-handed alpha
Helix 19	AC1	J	308	312	Right-handed 310
Helix 20	AC2	J	316	318	Right-handed 310
Helix 21	AC3	J	326	340	Right-handed alpha
Helix 22	AC4	B	15	23	Right-handed alpha
Helix 23	AC5	B	23	35	Right-handed alpha
Helix 24	AC6	B	64	72	Right-handed alpha
Helix 25	AC7	B	107	117	Right-handed alpha
Helix 26	AC8	B	128	139	Right-handed alpha
Helix 27	AC9	I	63	70	Right-handed alpha
Helix 28	AD1	I	102	104	Right-handed 310
Helix 29	AD2	I	112	129	Right-handed alpha
Helix 30	AD3	I	131	144	Right-handed alpha
Helix 31	AD4	I	145	152	Right-handed 310
Helix 32	AD5	I	186	202	Right-handed alpha
Helix 33	AD6	I	250	259	Right-handed alpha
Helix 34	AD7	I	267	272	Right-handed alpha
Helix 35	AD8	I	296	306	Right-handed alpha
Helix 36	AD9	I	312	326	Right-handed alpha
Helix 37	AE1	D	102	104	Right-handed 310
Helix 38	AE2	D	111	129	Right-handed alpha
Helix 39	AE3	D	131	144	Right-handed alpha
Helix 40	AE4	D	145	153	Right-handed 310
Helix 41	AE5	D	186	202	Right-handed alpha
Helix 42	AE6	D	250	259	Right-handed alpha
Helix 43	AE7	D	296	306	Right-handed alpha
Helix 44	AE8	D	312	326	Right-handed alpha
Helix 45	AE9	E	65	69	Right-handed 310
Helix 46	AF1	E	102	106	Right-handed 310
Helix 47	AF2	E	111	129	Right-handed alpha
Helix 48	AF3	E	131	144	Right-handed alpha
Helix 49	AF4	E	145	153	Right-handed 310
Helix 50	AF5	E	173	177	Right-handed 310
Helix 51	AF6	E	186	201	Right-handed alpha
Helix 52	AF7	E	250	259	Right-handed alpha
Helix 53	AF8	E	267	272	Right-handed alpha
Helix 54	AF9	E	296	306	Right-handed alpha
Helix 55	AG1	E	312	326	Right-handed alpha
Helix 56	AG2	F	63	70	Right-handed alpha
Helix 57	AG3	F	102	104	Right-handed 310
Helix 58	AG4	F	111	129	Right-handed alpha
Helix 59	AG5	F	131	144	Right-handed alpha
Helix 60	AG6	F	145	153	Right-handed 310
Helix 61	AG7	F	186	202	Right-handed alpha
Helix 62	AG8	F	250	259	Right-handed alpha
Helix 63	AG9	F	267	272	Right-handed alpha
Helix 64	AH1	F	296	306	Right-handed alpha
Helix 65	AH2	F	312	326	Right-handed alpha
Helix 66	AH3	G	63	68	Right-handed alpha
Helix 67	AH4	G	112	129	Right-handed alpha
Helix 68	AH5	G	131	144	Right-handed alpha
Helix 69	AH6	G	145	153	Right-handed 310
Helix 70	AH7	G	186	202	Right-handed alpha
Helix 71	AH8	G	250	259	Right-handed alpha
Helix 72	AH9	G	296	306	Right-handed alpha
Helix 73	AI1	G	312	326	Right-handed alpha
Helix 74	AI2	H	36	40	Right-handed 310
Helix 75	AI3	H	63	68	Right-handed alpha
Helix 76	AI4	H	102	104	Right-handed 310
Helix 77	AI5	H	111	129	Right-handed alpha
Helix 78	AI6	H	131	144	Right-handed alpha
Helix 79	AI7	H	145	153	Right-handed 310
Helix 80	AI8	H	186	202	Right-handed alpha
Helix 81	AI9	H	250	259	Right-handed alpha
Helix 82	AJ1	H	267	272	Right-handed alpha
Helix 83	AJ2	H	296	305	Right-handed alpha
Helix 84	AJ3	H	312	326	Right-handed alpha

There are 38 sheets in PDB entry 8YEO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	5	17	anti-parallel
Strand 4	A	144	148	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	5	17	anti-parallel
Strand 4	A	101	113	anti-parallel
Strand 5	A	51	64	anti-parallel
Strand 6	A	158	162	anti-parallel
Strand 7	A	220	229	anti-parallel
Strand 8	A	190	196	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	J	212	214	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	74	76	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	218	first strand
Strand 2	J	157	163	parallel
Strand 3	J	149	154	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	246	first strand
Strand 2	A	249	253	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	37	first strand
Strand 2	J	78	80	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	301	305	first strand
Strand 2	J	320	324	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	42	first strand
Strand 2	B	57	62	anti-parallel
Strand 3	B	2	8	anti-parallel
Strand 4	B	84	86	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	42	first strand
Strand 2	B	57	62	anti-parallel
Strand 3	B	2	8	anti-parallel
Strand 4	B	91	92	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	154	162	anti-parallel
Strand 3	B	142	147	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	21	first strand
Strand 2	I	106	109	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	27	first strand
Strand 2	I	90	99	anti-parallel
Strand 3	I	31	35	anti-parallel
Strand 4	I	45	46	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	27	first strand
Strand 2	I	90	99	anti-parallel
Strand 3	I	207	216	anti-parallel
Strand 4	I	157	164	anti-parallel
Strand 5	I	167	168	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	50	57	first strand
Strand 2	I	74	81	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	242	243	first strand
Strand 2	I	246	247	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	260	262	first strand
Strand 2	I	275	276	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	D	106	109	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	27	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	31	35	anti-parallel
Strand 4	D	45	46	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	27	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	207	216	anti-parallel
Strand 4	D	157	163	anti-parallel
Strand 5	D	172	173	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	243	first strand
Strand 2	D	246	247	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	27	first strand
Strand 2	E	90	99	anti-parallel
Strand 3	E	30	35	anti-parallel
Strand 4	E	207	215	first strand
Strand 5	E	158	164	anti-parallel
Strand 6	E	167	168	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	30	35	anti-parallel
Strand 3	E	90	99	anti-parallel
Strand 4	E	246	249	first strand
Strand 5	E	242	243	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	57	first strand
Strand 2	E	74	81	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	21	first strand
Strand 2	F	106	109	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	27	first strand
Strand 2	F	90	99	anti-parallel
Strand 3	F	31	35	anti-parallel
Strand 4	F	45	46	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	27	first strand
Strand 2	F	90	99	anti-parallel
Strand 3	F	207	216	anti-parallel
Strand 4	F	158	163	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	56	first strand
Strand 2	F	75	81	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	242	243	first strand
Strand 2	F	246	247	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	106	109	first strand
Strand 2	G	19	21	anti-parallel
Strand 3	G	327	328	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	27	first strand
Strand 2	G	90	99	anti-parallel
Strand 3	G	30	35	anti-parallel
Strand 4	G	207	216	first strand
Strand 5	G	158	164	anti-parallel
Strand 6	G	167	168	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	46	first strand
Strand 2	G	30	35	anti-parallel
Strand 3	G	90	99	anti-parallel
Strand 4	G	246	249	first strand
Strand 5	G	242	243	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	56	first strand
Strand 2	G	75	81	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	21	first strand
Strand 2	H	106	108	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	27	first strand
Strand 2	H	90	99	anti-parallel
Strand 3	H	31	35	anti-parallel
Strand 4	H	45	46	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	27	first strand
Strand 2	H	90	99	anti-parallel
Strand 3	H	207	216	anti-parallel
Strand 4	H	158	164	anti-parallel
Strand 5	H	167	168	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	50	57	first strand
Strand 2	H	74	81	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	242	243	first strand
Strand 2	H	246	247	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YEO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YEO