Analysis of interatomic Contacts of Structural Units in PDB entry:
8YEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YEV entry

There are 4 chains in PDB entry 8YEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 135GLN 320
A
 ILE 322LYS 480
B
 VAL 135GLN 320
B
 ILE 322LYS 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8YEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
136 140Right-handed 310
Helix 2
AA2
A
193 213Right-handed alpha
Helix 3
AA3
A
244 252Right-handed alpha
Helix 4
AA4
A
258 278Right-handed alpha
Helix 5
AA5
A
289 291Right-handed 310
Helix 6
AA6
A
315 317Right-handed 310
Helix 7
AA7
A
324 328Right-handed 310
Helix 8
AA8
A
329 334Right-handed alpha
Helix 9
AA9
A
340 357Right-handed alpha
Helix 10
AB1
A
365 378Right-handed alpha
Helix 11
AB2
A
381 386Right-handed alpha
Helix 12
AB3
A
390 393Right-handed 310
Helix 13
AB4
A
422 427Right-handed alpha
Helix 14
AB5
A
433 437Right-handed 310
Helix 15
AB6
A
445 460Right-handed alpha
Helix 16
AB7
A
469 475Right-handed alpha
Helix 17
AB8
A
476 480Right-handed 310
Helix 18
AB9
B
136 140Right-handed 310
Helix 19
AC1
B
193 213Right-handed alpha
Helix 20
AC2
B
244 252Right-handed alpha
Helix 21
AC3
B
258 278Right-handed alpha
Helix 22
AC4
B
289 291Right-handed 310
Helix 23
AC5
B
315 317Right-handed 310
Helix 24
AC6
B
324 328Right-handed 310
Helix 25
AC7
B
329 334Right-handed alpha
Helix 26
AC8
B
340 357Right-handed alpha
Helix 27
AC9
B
365 378Right-handed alpha
Helix 28
AD1
B
381 386Right-handed alpha
Helix 29
AD2
B
390 394Right-handed alpha
Helix 30
AD3
B
422 427Right-handed alpha
Helix 31
AD4
B
433 437Right-handed 310
Helix 32
AD5
B
445 460Right-handed alpha
Helix 33
AD6
B
469 474Right-handed alpha
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There are 8 sheets in PDB entry 8YEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
159 168anti-parallel
Strand 3
A
171 178anti-parallel
Strand 4
A
183 190anti-parallel
Strand 5
A
233 239anti-parallel
Strand 6
A
224 230anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 284first strand
Strand 2
A
312 313anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
303 305anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
403 405anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
159 168anti-parallel
Strand 3
B
171 178anti-parallel
Strand 4
B
183 190anti-parallel
Strand 5
B
233 239anti-parallel
Strand 6
B
224 230anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 284first strand
Strand 2
B
312 313anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
303 305anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
403 405anti-parallel
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