Analysis of interatomic Contacts of Structural Units in PDB entry:
8YF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YF0 entry

There are 2 chains in PDB entry 8YF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 133GLY 709
C
 PRO 133PRO 734
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8YF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
133 160Right-handed alpha
Helix 2
AA2
B
162 188Right-handed alpha
Helix 3
AA3
B
189 194Right-handed alpha
Helix 4
AA4
B
195 197Right-handed 310
Helix 5
AA5
B
200 230Right-handed alpha
Helix 6
AA6
B
230 250Right-handed alpha
Helix 7
AA7
B
254 270Right-handed alpha
Helix 8
AA8
B
271 284Right-handed alpha
Helix 9
AA9
B
288 295Right-handed alpha
Helix 10
AB1
B
296 315Right-handed alpha
Helix 11
AB2
B
318 322Right-handed 310
Helix 12
AB3
B
332 352Right-handed alpha
Helix 13
AB4
B
357 365Right-handed alpha
Helix 14
AB5
B
367 385Right-handed alpha
Helix 15
AB6
B
388 403Right-handed alpha
Helix 16
AB7
B
416 439Right-handed alpha
Helix 17
AB8
B
443 467Right-handed alpha
Helix 18
AB9
B
467 482Right-handed alpha
Helix 19
AC1
B
587 622Right-handed alpha
Helix 20
AC2
B
625 644Right-handed alpha
Helix 21
AC3
B
649 677Right-handed alpha
Helix 22
AC4
B
681 708Right-handed alpha
Helix 23
AC5
C
134 160Right-handed alpha
Helix 24
AC6
C
162 188Right-handed alpha
Helix 25
AC7
C
191 196Right-handed alpha
Helix 26
AC8
C
200 205Right-handed 310
Helix 27
AC9
C
206 230Right-handed alpha
Helix 28
AD1
C
230 252Right-handed alpha
Helix 29
AD2
C
254 271Right-handed alpha
Helix 30
AD3
C
272 282Right-handed alpha
Helix 31
AD4
C
288 295Right-handed alpha
Helix 32
AD5
C
295 315Right-handed alpha
Helix 33
AD6
C
331 340Right-handed alpha
Helix 34
AD7
C
341 352Right-handed alpha
Helix 35
AD8
C
357 365Right-handed alpha
Helix 36
AD9
C
366 385Right-handed alpha
Helix 37
AE1
C
387 400Right-handed alpha
Helix 38
AE2
C
416 439Right-handed alpha
Helix 39
AE3
C
443 466Right-handed alpha
Helix 40
AE4
C
466 483Right-handed alpha
Helix 41
AE5
C
590 622Right-handed alpha
Helix 42
AE6
C
626 644Right-handed alpha
Helix 43
AE7
C
647 677Right-handed alpha
Helix 44
AE8
C
678 707Right-handed alpha
Helix 45
AE9
C
713 726Right-handed alpha
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There are 4 sheets in PDB entry 8YF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
485 487first strand
Strand 2
B
504 506parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
521 526first strand
Strand 2
B
541 546parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
504 507first strand
Strand 2
C
524 527parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
530 532first strand
Strand 2
C
550 552parallel
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