Analysis of interatomic Contacts of Structural Units in PDB entry:
8YF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YF1 entry

There are 2 chains in PDB entry 8YF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 133GLY 709
A
 PRO 133PRO 734
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8YF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
133 160Right-handed alpha
Helix 2
AA2
B
163 189Right-handed alpha
Helix 3
AA3
B
202 226Right-handed alpha
Helix 4
AA4
B
231 251Right-handed alpha
Helix 5
AA5
B
254 271Right-handed alpha
Helix 6
AA6
B
272 282Right-handed alpha
Helix 7
AA7
B
289 294Right-handed alpha
Helix 8
AA8
B
295 315Right-handed alpha
Helix 9
AA9
B
318 322Right-handed 310
Helix 10
AB1
B
332 341Right-handed alpha
Helix 11
AB2
B
341 351Right-handed alpha
Helix 12
AB3
B
357 365Right-handed alpha
Helix 13
AB4
B
367 382Right-handed alpha
Helix 14
AB5
B
388 399Right-handed alpha
Helix 15
AB6
B
416 439Right-handed alpha
Helix 16
AB7
B
443 457Right-handed alpha
Helix 17
AB8
B
458 484Right-handed alpha
Helix 18
AB9
B
562 566Right-handed 310
Helix 19
AC1
B
596 609Right-handed alpha
Helix 20
AC2
B
609 622Right-handed alpha
Helix 21
AC3
B
625 644Right-handed alpha
Helix 22
AC4
B
649 677Right-handed alpha
Helix 23
AC5
B
678 680Right-handed 310
Helix 24
AC6
B
681 708Right-handed alpha
Helix 25
AC7
A
134 160Right-handed alpha
Helix 26
AC8
A
162 189Right-handed alpha
Helix 27
AC9
A
192 196Right-handed 310
Helix 28
AD1
A
202 230Right-handed alpha
Helix 29
AD2
A
230 251Right-handed alpha
Helix 30
AD3
A
254 271Right-handed alpha
Helix 31
AD4
A
272 281Right-handed alpha
Helix 32
AD5
A
282 284Right-handed 310
Helix 33
AD6
A
285 294Right-handed alpha
Helix 34
AD7
A
296 315Right-handed alpha
Helix 35
AD8
A
331 341Right-handed alpha
Helix 36
AD9
A
341 352Right-handed alpha
Helix 37
AE1
A
357 364Right-handed alpha
Helix 38
AE2
A
367 383Right-handed alpha
Helix 39
AE3
A
386 391Right-handed 310
Helix 40
AE4
A
392 402Right-handed alpha
Helix 41
AE5
A
419 438Right-handed alpha
Helix 42
AE6
A
445 466Right-handed alpha
Helix 43
AE7
A
466 483Right-handed alpha
Helix 44
AE8
A
591 593Right-handed 310
Helix 45
AE9
A
594 620Right-handed alpha
Helix 46
AF1
A
626 643Right-handed alpha
Helix 47
AF2
A
648 677Right-handed alpha
Helix 48
AF3
A
681 707Right-handed alpha
Helix 49
AF4
A
713 727Right-handed alpha
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There are 2 sheets in PDB entry 8YF1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
535 536first strand
Strand 2
B
555 556parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
541 542parallel
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