Analysis of interatomic Contacts of Structural Units in PDB entry:
8YF3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YF3 entry

There is 1 chain in PDB entry 8YF3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8YF3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed alpha
Helix 2
AA2
A
29 38Right-handed alpha
Helix 3
AA3
A
49 60Right-handed alpha
Helix 4
AA4
A
69 73Right-handed 310
Helix 5
AA5
A
74 83Right-handed alpha
Helix 6
AA6
A
136 149Right-handed alpha
Helix 7
AA7
A
165 180Right-handed alpha
Helix 8
AA8
A
192 194Right-handed 310
Helix 9
AA9
A
210 217Right-handed alpha
Helix 10
AB1
A
222 227Right-handed 310
Helix 11
AB2
A
236 241Right-handed alpha
Helix 12
AB3
A
247 260Right-handed alpha
Helix 13
AB4
A
261 267Right-handed alpha
Helix 14
AB5
A
268 271Right-handed 310
Helix 15
AB6
A
282 284Right-handed 310
Helix 16
AB7
A
321 329Right-handed alpha
Helix 17
AB8
A
340 350Right-handed alpha
Helix 18
AB9
A
353 368Right-handed alpha
Helix 19
AC1
A
369 372Right-handed 310
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There are 2 sheets in PDB entry 8YF3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
40 46parallel
Strand 3
A
19 24parallel
Strand 4
A
91 94parallel
Strand 5
A
152 157parallel
Strand 6
A
201 209anti-parallel
Strand 7
A
182 190anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
294 295anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il