Analysis of interatomic Contacts of Structural Units in PDB entry:
8YF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YF7 entry

There are 3 chains in PDB entry 8YF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 52PRO 215
B
 THR 52PRO 215
C
 THR 35PRO 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8YF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 88Right-handed 310
Helix 2
AA2
A
89 98Right-handed alpha
Helix 3
AA3
A
137 144Right-handed alpha
Helix 4
AA4
A
174 178Right-handed 310
Helix 5
AA5
B
89 98Right-handed alpha
Helix 6
AA6
B
137 144Right-handed alpha
Helix 7
AA7
B
174 178Right-handed 310
Helix 8
AA8
C
85 88Right-handed 310
Helix 9
AA9
C
89 97Right-handed alpha
Helix 10
AB1
C
137 144Right-handed alpha
Helix 11
AB2
C
174 178Right-handed 310
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There are 9 sheets in PDB entry 8YF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 68first strand
Strand 2
A
195 210anti-parallel
Strand 3
A
99 114anti-parallel
Strand 4
A
156 158anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 68first strand
Strand 2
A
195 210anti-parallel
Strand 3
A
99 114anti-parallel
Strand 4
A
167 168anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
122 128anti-parallel
Strand 4
A
148 151anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 68first strand
Strand 2
B
195 210anti-parallel
Strand 3
B
99 114anti-parallel
Strand 4
B
156 158anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 68first strand
Strand 2
B
195 210anti-parallel
Strand 3
B
99 114anti-parallel
Strand 4
B
166 168anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
B
182 188anti-parallel
Strand 3
B
122 128anti-parallel
Strand 4
B
148 151anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 68first strand
Strand 2
C
195 210anti-parallel
Strand 3
C
99 113anti-parallel
Strand 4
C
156 158anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 68first strand
Strand 2
C
195 210anti-parallel
Strand 3
C
99 113anti-parallel
Strand 4
C
167 168anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 84first strand
Strand 2
C
181 187anti-parallel
Strand 3
C
122 128anti-parallel
Strand 4
C
148 151anti-parallel
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