Analysis of interatomic Contacts of Structural Units in PDB entry:
8YF8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YF8 entry

There are 3 chains in PDB entry 8YF8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 52	ASP 335
B	THR 52	ASP 335
C	ARG 31	ASP 335

There are 17 helices in PDB entry 8YF8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	96	Right-handed alpha
Helix 2	AA2	A	137	144	Right-handed alpha
Helix 3	AA3	A	174	178	Right-handed 310
Helix 4	AA4	A	214	219	Right-handed 310
Helix 5	AA5	A	239	244	Right-handed alpha
Helix 6	AA6	A	245	250	Right-handed alpha
Helix 7	AA7	B	89	94	Right-handed alpha
Helix 8	AA8	B	137	144	Right-handed alpha
Helix 9	AA9	B	174	178	Right-handed 310
Helix 10	AB1	B	214	219	Right-handed alpha
Helix 11	AB2	B	231	233	Right-handed 310
Helix 12	AB3	B	245	250	Right-handed alpha
Helix 13	AB4	C	89	94	Right-handed alpha
Helix 14	AB5	C	137	144	Right-handed alpha
Helix 15	AB6	C	174	178	Right-handed 310
Helix 16	AB7	C	241	244	Right-handed 310
Helix 17	AB8	C	245	250	Right-handed alpha

There are 19 sheets in PDB entry 8YF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	68	first strand
Strand 2	A	195	210	anti-parallel
Strand 3	A	99	113	anti-parallel
Strand 4	A	157	158	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	68	first strand
Strand 2	A	195	210	anti-parallel
Strand 3	A	99	113	anti-parallel
Strand 4	A	167	168	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	83	first strand
Strand 2	A	182	187	anti-parallel
Strand 3	A	122	128	anti-parallel
Strand 4	A	148	151	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	330	333	anti-parallel
Strand 3	A	257	259	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	323	325	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	270	first strand
Strand 2	A	273	279	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	295	297	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	307	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	68	first strand
Strand 2	B	195	207	anti-parallel
Strand 3	B	104	114	anti-parallel
Strand 4	B	157	158	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	83	first strand
Strand 2	B	182	187	anti-parallel
Strand 3	B	122	128	anti-parallel
Strand 4	B	148	151	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	167	168	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	223	first strand
Strand 2	B	330	333	anti-parallel
Strand 3	B	257	268	anti-parallel
Strand 4	B	274	285	anti-parallel
Strand 5	B	295	299	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	229	first strand
Strand 2	B	323	325	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	68	first strand
Strand 2	C	195	205	anti-parallel
Strand 3	C	104	114	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	83	first strand
Strand 2	C	182	187	anti-parallel
Strand 3	C	122	128	anti-parallel
Strand 4	C	148	151	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	99	102	anti-parallel
Strand 3	C	208	210	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	330	335	anti-parallel
Strand 3	C	256	265	anti-parallel
Strand 4	C	277	284	anti-parallel
Strand 5	C	295	302	anti-parallel
Strand 6	C	238	239	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	330	335	anti-parallel
Strand 3	C	256	265	anti-parallel
Strand 4	C	277	284	anti-parallel
Strand 5	C	295	302	anti-parallel
Strand 6	C	307	310	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	229	first strand
Strand 2	C	323	325	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YF8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YF8