Analysis of interatomic Contacts of Structural Units in PDB entry:
8YFC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YFC entry

There are 6 chains in PDB entry 8YFC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 570	GLU 2521
B	GLU 570	GLU 2521
D	GLU 570	GLU 2521
C	CYS 227	SER 247
E	CYS 227	SER 247
F	CYS 227	SER 247

There are180 helices in PDB entry 8YFC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	570	579	Right-handed alpha
Helix 2	AA2	A	580	592	Right-handed alpha
Helix 3	AA3	A	598	604	Right-handed alpha
Helix 4	AA4	A	604	618	Right-handed alpha
Helix 5	AA5	A	626	643	Right-handed alpha
Helix 6	AA6	A	679	700	Right-handed alpha
Helix 7	AA7	A	702	707	Right-handed alpha
Helix 8	AA8	A	768	786	Right-handed alpha
Helix 9	AA9	A	787	792	Right-handed alpha
Helix 10	AB1	A	792	802	Right-handed alpha
Helix 11	AB2	A	810	815	Right-handed 310
Helix 12	AB3	A	818	823	Right-handed alpha
Helix 13	AB4	A	825	827	Right-handed 310
Helix 14	AB5	A	828	849	Right-handed alpha
Helix 15	AB6	A	925	930	Right-handed alpha
Helix 16	AB7	A	931	955	Right-handed alpha
Helix 17	AB8	A	978	989	Right-handed alpha
Helix 18	AB9	A	989	1009	Right-handed alpha
Helix 19	AC1	A	1013	1027	Right-handed alpha
Helix 20	AC2	A	1030	1036	Right-handed alpha
Helix 21	AC3	A	1037	1057	Right-handed alpha
Helix 22	AC4	A	1097	1117	Right-handed alpha
Helix 23	AC5	A	1155	1163	Right-handed alpha
Helix 24	AC6	A	1165	1181	Right-handed alpha
Helix 25	AC7	A	1183	1199	Right-handed alpha
Helix 26	AC8	A	1201	1206	Right-handed alpha
Helix 27	AC9	A	1212	1231	Right-handed alpha
Helix 28	AD1	A	1285	1302	Right-handed alpha
Helix 29	AD2	A	1305	1320	Right-handed alpha
Helix 30	AD3	A	1320	1370	Right-handed alpha
Helix 31	AD4	A	1409	1414	Right-handed alpha
Helix 32	AD5	A	1417	1422	Right-handed 310
Helix 33	AD6	A	1514	1540	Right-handed alpha
Helix 34	AD7	A	1658	1660	Right-handed 310
Helix 35	AD8	A	1661	1669	Right-handed alpha
Helix 36	AD9	A	1672	1686	Right-handed alpha
Helix 37	AE1	A	1686	1702	Right-handed alpha
Helix 38	AE2	A	1709	1717	Right-handed alpha
Helix 39	AE3	A	1727	1746	Right-handed alpha
Helix 40	AE4	A	1785	1803	Right-handed alpha
Helix 41	AE5	A	1941	1952	Right-handed alpha
Helix 42	AE6	A	1960	1978	Right-handed alpha
Helix 43	AE7	A	2000	2024	Right-handed alpha
Helix 44	AE8	A	2026	2044	Right-handed alpha
Helix 45	AE9	A	2061	2084	Right-handed alpha
Helix 46	AF1	A	2092	2096	Right-handed 310
Helix 47	AF2	A	2100	2112	Right-handed alpha
Helix 48	AF3	A	2114	2127	Right-handed alpha
Helix 49	AF4	A	2132	2159	Right-handed alpha
Helix 50	AF5	A	2168	2200	Right-handed alpha
Helix 51	AF6	A	2236	2247	Right-handed alpha
Helix 52	AF7	A	2250	2260	Right-handed alpha
Helix 53	AF8	A	2281	2294	Right-handed alpha
Helix 54	AF9	A	2332	2344	Right-handed alpha
Helix 55	AG1	A	2438	2457	Right-handed alpha
Helix 56	AG2	A	2461	2465	Right-handed 310
Helix 57	AG3	A	2474	2490	Right-handed alpha
Helix 58	AG4	A	2492	2507	Right-handed alpha
Helix 59	AG5	A	2509	2517	Right-handed alpha
Helix 60	AG6	B	571	579	Right-handed alpha
Helix 61	AG7	B	580	592	Right-handed alpha
Helix 62	AG8	B	598	604	Right-handed alpha
Helix 63	AG9	B	604	618	Right-handed alpha
Helix 64	AH1	B	626	643	Right-handed alpha
Helix 65	AH2	B	679	700	Right-handed alpha
Helix 66	AH3	B	702	707	Right-handed alpha
Helix 67	AH4	B	768	786	Right-handed alpha
Helix 68	AH5	B	787	792	Right-handed alpha
Helix 69	AH6	B	792	802	Right-handed alpha
Helix 70	AH7	B	810	815	Right-handed 310
Helix 71	AH8	B	818	823	Right-handed alpha
Helix 72	AH9	B	825	827	Right-handed 310
Helix 73	AI1	B	828	849	Right-handed alpha
Helix 74	AI2	B	925	930	Right-handed alpha
Helix 75	AI3	B	931	955	Right-handed alpha
Helix 76	AI4	B	978	989	Right-handed alpha
Helix 77	AI5	B	989	1009	Right-handed alpha
Helix 78	AI6	B	1013	1027	Right-handed alpha
Helix 79	AI7	B	1030	1036	Right-handed alpha
Helix 80	AI8	B	1037	1057	Right-handed alpha
Helix 81	AI9	B	1097	1117	Right-handed alpha
Helix 82	AJ1	B	1155	1163	Right-handed alpha
Helix 83	AJ2	B	1165	1181	Right-handed alpha
Helix 84	AJ3	B	1183	1199	Right-handed alpha
Helix 85	AJ4	B	1201	1206	Right-handed alpha
Helix 86	AJ5	B	1212	1231	Right-handed alpha
Helix 87	AJ6	B	1285	1302	Right-handed alpha
Helix 88	AJ7	B	1305	1320	Right-handed alpha
Helix 89	AJ8	B	1320	1370	Right-handed alpha
Helix 90	AJ9	B	1409	1414	Right-handed alpha
Helix 91	AK1	B	1417	1422	Right-handed 310
Helix 92	AK2	B	1514	1540	Right-handed alpha
Helix 93	AK3	B	1658	1660	Right-handed 310
Helix 94	AK4	B	1661	1669	Right-handed alpha
Helix 95	AK5	B	1672	1686	Right-handed alpha
Helix 96	AK6	B	1686	1702	Right-handed alpha
Helix 97	AK7	B	1709	1717	Right-handed alpha
Helix 98	AK8	B	1727	1746	Right-handed alpha
Helix 99	AK9	B	1785	1803	Right-handed alpha
Helix 100	AL1	B	1941	1952	Right-handed alpha
Helix 101	AL2	B	1960	1978	Right-handed alpha
Helix 102	AL3	B	2000	2024	Right-handed alpha
Helix 103	AL4	B	2026	2044	Right-handed alpha
Helix 104	AL5	B	2061	2084	Right-handed alpha
Helix 105	AL6	B	2092	2096	Right-handed 310
Helix 106	AL7	B	2100	2112	Right-handed alpha
Helix 107	AL8	B	2114	2127	Right-handed alpha
Helix 108	AL9	B	2132	2159	Right-handed alpha
Helix 109	AM1	B	2168	2200	Right-handed alpha
Helix 110	AM2	B	2236	2247	Right-handed alpha
Helix 111	AM3	B	2250	2260	Right-handed alpha
Helix 112	AM4	B	2281	2294	Right-handed alpha
Helix 113	AM5	B	2332	2344	Right-handed alpha
Helix 114	AM6	B	2438	2457	Right-handed alpha
Helix 115	AM7	B	2461	2465	Right-handed 310
Helix 116	AM8	B	2474	2490	Right-handed alpha
Helix 117	AM9	B	2492	2507	Right-handed alpha
Helix 118	AN1	B	2509	2517	Right-handed alpha
Helix 119	AN2	D	571	579	Right-handed alpha
Helix 120	AN3	D	580	592	Right-handed alpha
Helix 121	AN4	D	598	604	Right-handed alpha
Helix 122	AN5	D	604	618	Right-handed alpha
Helix 123	AN6	D	626	643	Right-handed alpha
Helix 124	AN7	D	679	700	Right-handed alpha
Helix 125	AN8	D	702	707	Right-handed alpha
Helix 126	AN9	D	768	786	Right-handed alpha
Helix 127	AO1	D	787	792	Right-handed alpha
Helix 128	AO2	D	792	802	Right-handed alpha
Helix 129	AO3	D	810	815	Right-handed 310
Helix 130	AO4	D	818	823	Right-handed alpha
Helix 131	AO5	D	825	827	Right-handed 310
Helix 132	AO6	D	828	849	Right-handed alpha
Helix 133	AO7	D	925	930	Right-handed alpha
Helix 134	AO8	D	931	955	Right-handed alpha
Helix 135	AO9	D	978	989	Right-handed alpha
Helix 136	AP1	D	989	1009	Right-handed alpha
Helix 137	AP2	D	1013	1027	Right-handed alpha
Helix 138	AP3	D	1030	1036	Right-handed alpha
Helix 139	AP4	D	1037	1057	Right-handed alpha
Helix 140	AP5	D	1097	1117	Right-handed alpha
Helix 141	AP6	D	1155	1163	Right-handed alpha
Helix 142	AP7	D	1165	1181	Right-handed alpha
Helix 143	AP8	D	1183	1199	Right-handed alpha
Helix 144	AP9	D	1201	1206	Right-handed alpha
Helix 145	AQ1	D	1212	1231	Right-handed alpha
Helix 146	AQ2	D	1285	1302	Right-handed alpha
Helix 147	AQ3	D	1305	1320	Right-handed alpha
Helix 148	AQ4	D	1320	1370	Right-handed alpha
Helix 149	AQ5	D	1409	1414	Right-handed alpha
Helix 150	AQ6	D	1417	1422	Right-handed 310
Helix 151	AQ7	D	1514	1540	Right-handed alpha
Helix 152	AQ8	D	1658	1660	Right-handed 310
Helix 153	AQ9	D	1661	1669	Right-handed alpha
Helix 154	AR1	D	1672	1686	Right-handed alpha
Helix 155	AR2	D	1686	1702	Right-handed alpha
Helix 156	AR3	D	1709	1717	Right-handed alpha
Helix 157	AR4	D	1727	1746	Right-handed alpha
Helix 158	AR5	D	1785	1803	Right-handed alpha
Helix 159	AR6	D	1941	1952	Right-handed alpha
Helix 160	AR7	D	1960	1978	Right-handed alpha
Helix 161	AR8	D	2000	2024	Right-handed alpha
Helix 162	AR9	D	2026	2044	Right-handed alpha
Helix 163	AS1	D	2061	2084	Right-handed alpha
Helix 164	AS2	D	2092	2096	Right-handed 310
Helix 165	AS3	D	2100	2112	Right-handed alpha
Helix 166	AS4	D	2114	2127	Right-handed alpha
Helix 167	AS5	D	2132	2159	Right-handed alpha
Helix 168	AS6	D	2168	2200	Right-handed alpha
Helix 169	AS7	D	2236	2247	Right-handed alpha
Helix 170	AS8	D	2250	2260	Right-handed alpha
Helix 171	AS9	D	2281	2294	Right-handed alpha
Helix 172	AT1	D	2332	2344	Right-handed alpha
Helix 173	AT2	D	2438	2457	Right-handed alpha
Helix 174	AT3	D	2461	2465	Right-handed 310
Helix 175	AT4	D	2474	2490	Right-handed alpha
Helix 176	AT5	D	2492	2507	Right-handed alpha
Helix 177	AT6	D	2509	2517	Right-handed alpha
Helix 178	AT7	C	229	245	Right-handed alpha
Helix 179	AT8	E	229	245	Right-handed alpha
Helix 180	AT9	F	229	245	Right-handed alpha

There are 9 sheets in PDB entry 8YFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2211	2215	first strand
Strand 2	A	2302	2306	anti-parallel
Strand 3	A	2323	2324	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2233	2234	first strand
Strand 2	A	2266	2271	anti-parallel
Strand 3	A	2417	2422	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2350	2352	first strand
Strand 2	A	2385	2391	anti-parallel
Strand 3	A	2402	2408	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2211	2215	first strand
Strand 2	B	2302	2306	anti-parallel
Strand 3	B	2323	2324	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2233	2234	first strand
Strand 2	B	2266	2271	anti-parallel
Strand 3	B	2417	2422	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2350	2352	first strand
Strand 2	B	2385	2391	anti-parallel
Strand 3	B	2402	2408	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2211	2215	first strand
Strand 2	D	2302	2306	anti-parallel
Strand 3	D	2323	2324	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2233	2234	first strand
Strand 2	D	2266	2271	anti-parallel
Strand 3	D	2417	2422	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2350	2352	first strand
Strand 2	D	2385	2391	anti-parallel
Strand 3	D	2402	2408	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YFC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YFC