Analysis of interatomic Contacts of Structural Units in PDB entry:
8YFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YFD entry

There are 2 chains in PDB entry 8YFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 227GLU 622
B
 GLN 227GLU 622
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8YFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
230 258Right-handed alpha
Helix 2
AA2
A
265 296Right-handed alpha
Helix 3
AA3
A
312 337Right-handed alpha
Helix 4
AA4
A
345 360Right-handed alpha
Helix 5
AA5
A
367 383Right-handed alpha
Helix 6
AA6
A
390 402Right-handed alpha
Helix 7
AA7
A
403 419Right-handed alpha
Helix 8
AA8
A
447 471Right-handed alpha
Helix 9
AA9
A
476 501Right-handed alpha
Helix 10
AB1
A
506 532Right-handed alpha
Helix 11
AB2
A
555 571Right-handed alpha
Helix 12
AB3
A
572 583Right-handed alpha
Helix 13
AB4
A
588 622Right-handed alpha
Helix 14
AB5
B
230 258Right-handed alpha
Helix 15
AB6
B
265 296Right-handed alpha
Helix 16
AB7
B
298 303Right-handed alpha
Helix 17
AB8
B
312 337Right-handed alpha
Helix 18
AB9
B
343 345Right-handed 310
Helix 19
AC1
B
346 360Right-handed alpha
Helix 20
AC2
B
369 382Right-handed alpha
Helix 21
AC3
B
390 399Right-handed alpha
Helix 22
AC4
B
404 420Right-handed alpha
Helix 23
AC5
B
448 471Right-handed alpha
Helix 24
AC6
B
473 501Right-handed alpha
Helix 25
AC7
B
506 532Right-handed alpha
Helix 26
AC8
B
555 571Right-handed alpha
Helix 27
AC9
B
573 580Right-handed alpha
Helix 28
AD1
B
588 622Right-handed alpha
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There are no sheets in PDB entry 8YFD
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