Analysis of interatomic Contacts of Structural Units in PDB entry:
8YFE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YFE entry

There are 4 chains in PDB entry 8YFE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	ALA 868
B	SER 2	ASN 376
C	ALA 5	GLU 867
D	SER 2	GLU 378

There are 88 helices in PDB entry 8YFE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	14	Right-handed alpha
Helix 2	AA2	A	28	32	Right-handed 310
Helix 3	AA3	A	55	57	Right-handed 310
Helix 4	AA4	A	59	63	Right-handed 310
Helix 5	AA5	A	72	92	Right-handed alpha
Helix 6	AA6	A	109	129	Right-handed alpha
Helix 7	AA7	A	156	160	Right-handed 310
Helix 8	AA8	A	164	185	Right-handed alpha
Helix 9	AA9	A	186	189	Right-handed 310
Helix 10	AB1	A	203	217	Right-handed alpha
Helix 11	AB2	A	234	243	Right-handed alpha
Helix 12	AB3	A	290	302	Right-handed alpha
Helix 13	AB4	A	312	328	Right-handed alpha
Helix 14	AB5	A	343	356	Right-handed alpha
Helix 15	AB6	A	370	407	Right-handed alpha
Helix 16	AB7	A	541	552	Right-handed alpha
Helix 17	AB8	A	555	583	Right-handed alpha
Helix 18	AB9	A	599	603	Right-handed 310
Helix 19	AC1	A	620	629	Right-handed alpha
Helix 20	AC2	A	638	640	Right-handed 310
Helix 21	AC3	A	641	646	Right-handed alpha
Helix 22	AC4	A	652	656	Right-handed 310
Helix 23	AC5	A	669	673	Right-handed 310
Helix 24	AC6	A	681	691	Right-handed alpha
Helix 25	AC7	A	697	704	Right-handed alpha
Helix 26	AC8	A	719	728	Right-handed alpha
Helix 27	AC9	A	814	819	Right-handed alpha
Helix 28	AD1	A	838	842	Right-handed 310
Helix 29	AD2	A	857	868	Right-handed alpha
Helix 30	AD3	B	48	54	Right-handed alpha
Helix 31	AD4	B	69	74	Right-handed alpha
Helix 32	AD5	B	76	91	Right-handed alpha
Helix 33	AD6	B	102	111	Right-handed alpha
Helix 34	AD7	B	125	129	Right-handed 310
Helix 35	AD8	B	135	147	Right-handed alpha
Helix 36	AD9	B	151	167	Right-handed alpha
Helix 37	AE1	B	177	182	Right-handed alpha
Helix 38	AE2	B	183	187	Right-handed 310
Helix 39	AE3	B	225	229	Right-handed alpha
Helix 40	AE4	B	241	263	Right-handed alpha
Helix 41	AE5	B	288	295	Right-handed alpha
Helix 42	AE6	B	306	326	Right-handed alpha
Helix 43	AE7	B	353	363	Right-handed alpha
Helix 44	AE8	B	364	376	Right-handed alpha
Helix 45	AE9	C	6	14	Right-handed alpha
Helix 46	AF1	C	54	59	Right-handed alpha
Helix 47	AF2	C	72	92	Right-handed alpha
Helix 48	AF3	C	106	129	Right-handed alpha
Helix 49	AF4	C	164	184	Right-handed alpha
Helix 50	AF5	C	185	189	Right-handed 310
Helix 51	AF6	C	203	217	Right-handed alpha
Helix 52	AF7	C	234	243	Right-handed alpha
Helix 53	AF8	C	291	302	Right-handed alpha
Helix 54	AF9	C	312	328	Right-handed alpha
Helix 55	AG1	C	339	342	Right-handed 310
Helix 56	AG2	C	343	356	Right-handed alpha
Helix 57	AG3	C	370	382	Right-handed alpha
Helix 58	AG4	C	384	401	Right-handed alpha
Helix 59	AG5	C	401	406	Right-handed alpha
Helix 60	AG6	C	541	552	Right-handed alpha
Helix 61	AG7	C	555	581	Right-handed alpha
Helix 62	AG8	C	605	609	Right-handed 310
Helix 63	AG9	C	620	627	Right-handed alpha
Helix 64	AH1	C	641	647	Right-handed alpha
Helix 65	AH2	C	652	656	Right-handed 310
Helix 66	AH3	C	681	690	Right-handed alpha
Helix 67	AH4	C	691	696	Right-handed 310
Helix 68	AH5	C	697	703	Right-handed alpha
Helix 69	AH6	C	718	728	Right-handed alpha
Helix 70	AH7	C	810	819	Right-handed alpha
Helix 71	AH8	C	856	867	Right-handed alpha
Helix 72	AH9	D	48	54	Right-handed alpha
Helix 73	AI1	D	61	65	Right-handed 310
Helix 74	AI2	D	69	75	Right-handed alpha
Helix 75	AI3	D	76	91	Right-handed alpha
Helix 76	AI4	D	102	110	Right-handed alpha
Helix 77	AI5	D	111	114	Right-handed 310
Helix 78	AI6	D	125	129	Right-handed 310
Helix 79	AI7	D	135	149	Right-handed alpha
Helix 80	AI8	D	153	167	Right-handed alpha
Helix 81	AI9	D	172	176	Right-handed 310
Helix 82	AJ1	D	177	183	Right-handed alpha
Helix 83	AJ2	D	225	229	Right-handed alpha
Helix 84	AJ3	D	241	263	Right-handed alpha
Helix 85	AJ4	D	288	295	Right-handed alpha
Helix 86	AJ5	D	306	326	Right-handed alpha
Helix 87	AJ6	D	352	363	Right-handed alpha
Helix 88	AJ7	D	364	378	Right-handed alpha

There are 17 sheets in PDB entry 8YFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	286	289	anti-parallel
Strand 3	A	250	253	anti-parallel
Strand 4	A	229	230	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	53	first strand
Strand 2	A	96	100	parallel
Strand 3	A	192	196	parallel
Strand 4	A	710	713	anti-parallel
Strand 5	A	782	787	anti-parallel
Strand 6	A	747	750	anti-parallel
Strand 7	A	735	736	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	368	369	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	663	first strand
Strand 2	A	674	675	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	759	760	first strand
Strand 2	A	776	777	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	343	348	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	119	122	anti-parallel
Strand 5	B	133	134	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	194	203	anti-parallel
Strand 3	B	23	29	anti-parallel
Strand 4	B	35	36	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	194	203	anti-parallel
Strand 3	B	206	214	anti-parallel
Strand 4	B	98	101	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	43	45	anti-parallel
Strand 3	B	216	217	parallel
Strand 4	B	230	237	anti-parallel
Strand 5	B	266	272	parallel
Strand 6	B	278	285	anti-parallel

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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	286	290	anti-parallel
Strand 3	C	249	253	anti-parallel
Strand 4	C	229	230	parallel
Strand 5	C	47	53	parallel
Strand 6	C	93	100	parallel
Strand 7	C	192	196	parallel
Strand 8	C	710	714	anti-parallel
Strand 9	C	781	787	anti-parallel
Strand 10	C	747	749	anti-parallel
Strand 11	C	734	736	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	365	first strand
Strand 2	C	368	369	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	662	663	first strand
Strand 2	C	674	675	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	760	first strand
Strand 2	C	776	777	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	343	349	anti-parallel
Strand 3	D	331	336	anti-parallel
Strand 4	D	119	123	anti-parallel
Strand 5	D	132	134	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	D	23	29	anti-parallel
Strand 3	D	194	203	anti-parallel
Strand 4	D	206	214	anti-parallel
Strand 5	D	98	101	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	168	169	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	230	237	anti-parallel
Strand 3	D	266	272	parallel
Strand 4	D	278	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YFE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YFE