Analysis of interatomic Contacts of Structural Units in PDB entry:
8YFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YFH entry

There are 3 chains in PDB entry 8YFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 402
B
 MET 1PHE 402
C
 MET 1PHE 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8YFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 11Right-handed 310
Helix 2
AA2
A
15 29Right-handed alpha
Helix 3
AA3
A
41 59Right-handed alpha
Helix 4
AA4
A
76 89Right-handed alpha
Helix 5
AA5
A
116 125Right-handed alpha
Helix 6
AA6
A
125 132Right-handed alpha
Helix 7
AA7
A
142 146Right-handed 310
Helix 8
AA8
A
147 152Right-handed alpha
Helix 9
AA9
A
173 187Right-handed alpha
Helix 10
AB1
A
213 226Right-handed alpha
Helix 11
AB2
A
237 241Right-handed 310
Helix 12
AB3
A
255 260Right-handed alpha
Helix 13
AB4
A
264 270Right-handed alpha
Helix 14
AB5
A
271 281Right-handed alpha
Helix 15
AB6
A
315 319Right-handed 310
Helix 16
AB7
B
9 11Right-handed 310
Helix 17
AB8
B
15 29Right-handed alpha
Helix 18
AB9
B
41 59Right-handed alpha
Helix 19
AC1
B
76 89Right-handed alpha
Helix 20
AC2
B
116 125Right-handed alpha
Helix 21
AC3
B
125 132Right-handed alpha
Helix 22
AC4
B
142 146Right-handed 310
Helix 23
AC5
B
147 152Right-handed alpha
Helix 24
AC6
B
173 187Right-handed alpha
Helix 25
AC7
B
213 226Right-handed alpha
Helix 26
AC8
B
237 241Right-handed 310
Helix 27
AC9
B
255 260Right-handed alpha
Helix 28
AD1
B
264 281Right-handed alpha
Helix 29
AD2
B
315 319Right-handed 310
Helix 30
AD3
C
9 11Right-handed 310
Helix 31
AD4
C
15 29Right-handed alpha
Helix 32
AD5
C
41 59Right-handed alpha
Helix 33
AD6
C
76 89Right-handed alpha
Helix 34
AD7
C
116 125Right-handed alpha
Helix 35
AD8
C
125 132Right-handed alpha
Helix 36
AD9
C
142 146Right-handed 310
Helix 37
AE1
C
147 152Right-handed alpha
Helix 38
AE2
C
173 187Right-handed alpha
Helix 39
AE3
C
213 226Right-handed alpha
Helix 40
AE4
C
237 241Right-handed 310
Helix 41
AE5
C
255 260Right-handed alpha
Helix 42
AE6
C
264 281Right-handed alpha
Helix 43
AE7
C
315 319Right-handed 310
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There are 15 sheets in PDB entry 8YFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
99 105anti-parallel
Strand 3
A
136 139parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
99 105anti-parallel
Strand 3
A
63 69parallel
Strand 4
A
33 38parallel
Strand 5
A
2 7parallel
Strand 6
A
229 232parallel
Strand 7
A
189 194parallel
Strand 8
A
157 159parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
205 208anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 358first strand
Strand 2
A
322 329anti-parallel
Strand 3
A
290 296anti-parallel
Strand 4
A
396 402anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 348first strand
Strand 2
A
333 339anti-parallel
Strand 3
A
366 371anti-parallel
Strand 4
A
374 380anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
99 105anti-parallel
Strand 3
B
136 139parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
99 105anti-parallel
Strand 3
B
63 69parallel
Strand 4
B
33 38parallel
Strand 5
B
2 7parallel
Strand 6
B
229 232parallel
Strand 7
B
189 194parallel
Strand 8
B
157 159parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
205 208anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 358first strand
Strand 2
B
322 329anti-parallel
Strand 3
B
290 296anti-parallel
Strand 4
B
396 402anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 348first strand
Strand 2
B
333 339anti-parallel
Strand 3
B
366 371anti-parallel
Strand 4
B
374 380anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 96first strand
Strand 2
C
99 105anti-parallel
Strand 3
C
136 139parallel
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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 96first strand
Strand 2
C
99 105anti-parallel
Strand 3
C
63 69parallel
Strand 4
C
33 38parallel
Strand 5
C
2 7parallel
Strand 6
C
229 232parallel
Strand 7
C
189 194parallel
Strand 8
C
157 159parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 202first strand
Strand 2
C
205 208anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
351 358first strand
Strand 2
C
322 329anti-parallel
Strand 3
C
290 296anti-parallel
Strand 4
C
396 402anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
342 348first strand
Strand 2
C
333 339anti-parallel
Strand 3
C
366 371anti-parallel
Strand 4
C
374 380anti-parallel
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