Analysis of interatomic Contacts of Structural Units in PDB entry:
8YFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YFK entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 8YFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1494VAL 1594
B
 SER 103SER 103
B
 GLU 105VAL 109
G
 SER 1493ASN 1591
H
 SER 103SER 103
H
 GLU 105VAL 109
C
 GLU 1494ASN 1591
D
 SER 103SER 103
D
 GLU 105VAL 109
E
 SER 1493TRP 1590
F
 SER 103SER 103
F
 GLU 105VAL 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8YFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1532 1539Right-handed 310
Helix 2
AA2
G
1534 1538Right-handed 310
Helix 3
AA3
G
1547 1552Right-handed 310
Helix 4
AA4
C
1532 1535Right-handed 310
Helix 5
AA5
E
1534 1538Right-handed 310
Helix 6
AA6
E
1547 1552Right-handed 310
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There are 6 sheets in PDB entry 8YFK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1495 1496first strand
Strand 2
G
1496 1497anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
A
1554 1567anti-parallel
Strand 3
A
1581 1588anti-parallel
Strand 4
A
1528 1530parallel
Strand 5
A
1517 1520anti-parallel
Strand 6
A
1506 1512anti-parallel
Strand 7
A
1554 1567anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
106 108first strand
Strand 2
G
1555 1567anti-parallel
Strand 3
G
1581 1591anti-parallel
Strand 4
G
1528 1530parallel
Strand 5
G
1517 1520anti-parallel
Strand 6
G
1506 1512anti-parallel
Strand 7
G
1555 1567anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
106 108first strand
Strand 2
C
1554 1567anti-parallel
Strand 3
C
1506 1512anti-parallel
Strand 4
C
1495 1497parallel
Strand 5
E
1496 1497anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
106 108first strand
Strand 2
C
1554 1567anti-parallel
Strand 3
C
1581 1588anti-parallel
Strand 4
C
1528 1530parallel
Strand 5
C
1517 1520anti-parallel
Strand 6
C
1506 1512anti-parallel
Strand 7
C
1495 1497parallel
Strand 8
E
1496 1497anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
106 108first strand
Strand 2
E
1555 1567anti-parallel
Strand 3
E
1581 1589anti-parallel
Strand 4
E
1528 1530parallel
Strand 5
E
1517 1520anti-parallel
Strand 6
E
1506 1512anti-parallel
Strand 7
E
1555 1567anti-parallel
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