Analysis of interatomic Contacts of Structural Units in PDB entry:
8YG1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YG1 entry

There are 4 chains in PDB entry 8YG1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 11	ILE 1005
B	TYR 11	ILE 1005
C	VAL 26	GLN 297
D	ASN 24	GLN 297

There are148 helices in PDB entry 8YG1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	22	Right-handed alpha
Helix 2	AA2	A	23	39	Right-handed alpha
Helix 3	AA3	A	48	53	Right-handed alpha
Helix 4	AA4	A	60	70	Right-handed alpha
Helix 5	AA5	A	82	95	Right-handed alpha
Helix 6	AA6	A	98	108	Right-handed alpha
Helix 7	AA7	A	115	123	Right-handed alpha
Helix 8	AA8	A	137	146	Right-handed alpha
Helix 9	AA9	A	154	158	Right-handed 310
Helix 10	AB1	A	187	192	Right-handed alpha
Helix 11	AB2	A	197	210	Right-handed alpha
Helix 12	AB3	A	222	236	Right-handed alpha
Helix 13	AB4	A	254	264	Right-handed alpha
Helix 14	AB5	A	281	295	Right-handed alpha
Helix 15	AB6	A	307	317	Right-handed alpha
Helix 16	AB7	A	318	320	Right-handed 310
Helix 17	AB8	A	326	334	Right-handed alpha
Helix 18	AB9	A	355	366	Right-handed alpha
Helix 19	AC1	A	368	372	Right-handed 310
Helix 20	AC2	A	375	391	Right-handed alpha
Helix 21	AC3	A	418	426	Right-handed alpha
Helix 22	AC4	A	431	446	Right-handed alpha
Helix 23	AC5	A	447	462	Right-handed alpha
Helix 24	AC6	A	463	465	Right-handed 310
Helix 25	AC7	A	468	496	Right-handed alpha
Helix 26	AC8	A	497	499	Right-handed 310
Helix 27	AC9	A	508	519	Right-handed alpha
Helix 28	AD1	A	525	531	Right-handed alpha
Helix 29	AD2	A	532	539	Right-handed alpha
Helix 30	AD3	A	548	552	Right-handed 310
Helix 31	AD4	A	554	572	Right-handed alpha
Helix 32	AD5	A	579	598	Right-handed alpha
Helix 33	AD6	A	600	604	Right-handed 310
Helix 34	AD7	A	605	628	Right-handed alpha
Helix 35	AD8	A	632	640	Right-handed alpha
Helix 36	AD9	A	648	659	Right-handed alpha
Helix 37	AE1	A	660	671	Right-handed alpha
Helix 38	AE2	A	672	676	Right-handed 310
Helix 39	AE3	A	680	699	Right-handed alpha
Helix 40	AE4	A	705	723	Right-handed alpha
Helix 41	AE5	A	724	726	Right-handed 310
Helix 42	AE6	A	729	742	Right-handed alpha
Helix 43	AE7	A	750	765	Right-handed alpha
Helix 44	AE8	A	768	786	Right-handed alpha
Helix 45	AE9	A	800	812	Right-handed alpha
Helix 46	AF1	A	817	825	Right-handed alpha
Helix 47	AF2	A	832	841	Right-handed alpha
Helix 48	AF3	A	846	856	Right-handed alpha
Helix 49	AF4	A	864	872	Right-handed alpha
Helix 50	AF5	A	878	903	Right-handed alpha
Helix 51	AF6	A	912	922	Right-handed alpha
Helix 52	AF7	A	927	934	Right-handed 310
Helix 53	AF8	A	937	945	Right-handed alpha
Helix 54	AF9	A	950	954	Right-handed 310
Helix 55	AG1	A	955	961	Right-handed 310
Helix 56	AG2	A	963	973	Right-handed alpha
Helix 57	AG3	A	975	991	Right-handed alpha
Helix 58	AG4	A	993	1003	Right-handed alpha
Helix 59	AG5	B	12	21	Right-handed alpha
Helix 60	AG6	B	23	39	Right-handed alpha
Helix 61	AG7	B	47	53	Right-handed alpha
Helix 62	AG8	B	58	71	Right-handed alpha
Helix 63	AG9	B	85	96	Right-handed alpha
Helix 64	AH1	B	96	109	Right-handed alpha
Helix 65	AH2	B	115	123	Right-handed alpha
Helix 66	AH3	B	136	145	Right-handed alpha
Helix 67	AH4	B	155	161	Right-handed alpha
Helix 68	AH5	B	187	192	Right-handed alpha
Helix 69	AH6	B	192	197	Right-handed alpha
Helix 70	AH7	B	197	211	Right-handed alpha
Helix 71	AH8	B	223	235	Right-handed alpha
Helix 72	AH9	B	254	264	Right-handed alpha
Helix 73	AI1	B	281	295	Right-handed alpha
Helix 74	AI2	B	304	317	Right-handed alpha
Helix 75	AI3	B	318	321	Right-handed 310
Helix 76	AI4	B	326	335	Right-handed 310
Helix 77	AI5	B	357	366	Right-handed alpha
Helix 78	AI6	B	368	372	Right-handed 310
Helix 79	AI7	B	376	392	Right-handed alpha
Helix 80	AI8	B	411	416	Right-handed alpha
Helix 81	AI9	B	417	426	Right-handed alpha
Helix 82	AJ1	B	431	446	Right-handed alpha
Helix 83	AJ2	B	447	463	Right-handed alpha
Helix 84	AJ3	B	468	496	Right-handed alpha
Helix 85	AJ4	B	497	499	Right-handed 310
Helix 86	AJ5	B	508	519	Right-handed alpha
Helix 87	AJ6	B	532	539	Right-handed alpha
Helix 88	AJ7	B	540	546	Right-handed 310
Helix 89	AJ8	B	554	559	Right-handed alpha
Helix 90	AJ9	B	560	562	Right-handed 310
Helix 91	AK1	B	566	572	Right-handed alpha
Helix 92	AK2	B	579	598	Right-handed alpha
Helix 93	AK3	B	600	604	Right-handed 310
Helix 94	AK4	B	605	629	Right-handed alpha
Helix 95	AK5	B	633	639	Right-handed alpha
Helix 96	AK6	B	648	659	Right-handed alpha
Helix 97	AK7	B	660	671	Right-handed alpha
Helix 98	AK8	B	672	676	Right-handed 310
Helix 99	AK9	B	680	701	Right-handed alpha
Helix 100	AL1	B	705	722	Right-handed alpha
Helix 101	AL2	B	729	743	Right-handed alpha
Helix 102	AL3	B	750	762	Right-handed alpha
Helix 103	AL4	B	768	786	Right-handed alpha
Helix 104	AL5	B	801	812	Right-handed alpha
Helix 105	AL6	B	818	826	Right-handed alpha
Helix 106	AL7	B	833	839	Right-handed alpha
Helix 107	AL8	B	840	842	Right-handed 310
Helix 108	AL9	B	846	855	Right-handed alpha
Helix 109	AM1	B	861	871	Right-handed alpha
Helix 110	AM2	B	878	903	Right-handed alpha
Helix 111	AM3	B	911	922	Right-handed alpha
Helix 112	AM4	B	927	933	Right-handed alpha
Helix 113	AM5	B	937	945	Right-handed alpha
Helix 114	AM6	B	950	954	Right-handed 310
Helix 115	AM7	B	955	962	Right-handed 310
Helix 116	AM8	B	963	973	Right-handed alpha
Helix 117	AM9	B	975	991	Right-handed alpha
Helix 118	AN1	B	993	1003	Right-handed alpha
Helix 119	AN2	C	27	39	Right-handed alpha
Helix 120	AN3	C	48	53	Right-handed alpha
Helix 121	AN4	C	58	71	Right-handed alpha
Helix 122	AN5	C	80	95	Right-handed alpha
Helix 123	AN6	C	97	109	Right-handed alpha
Helix 124	AN7	C	115	123	Right-handed alpha
Helix 125	AN8	C	136	146	Right-handed alpha
Helix 126	AN9	C	154	160	Right-handed alpha
Helix 127	AO1	C	186	192	Right-handed alpha
Helix 128	AO2	C	193	196	Right-handed 310
Helix 129	AO3	C	197	211	Right-handed alpha
Helix 130	AO4	C	223	228	Right-handed alpha
Helix 131	AO5	C	229	235	Right-handed alpha
Helix 132	AO6	C	254	265	Right-handed alpha
Helix 133	AO7	C	281	296	Right-handed alpha
Helix 134	AO8	D	25	39	Right-handed alpha
Helix 135	AO9	D	47	52	Right-handed alpha
Helix 136	AP1	D	53	55	Right-handed 310
Helix 137	AP2	D	58	72	Right-handed alpha
Helix 138	AP3	D	80	96	Right-handed alpha
Helix 139	AP4	D	96	109	Right-handed alpha
Helix 140	AP5	D	115	124	Right-handed alpha
Helix 141	AP6	D	136	146	Right-handed alpha
Helix 142	AP7	D	154	158	Right-handed 310
Helix 143	AP8	D	186	192	Right-handed alpha
Helix 144	AP9	D	197	211	Right-handed alpha
Helix 145	AQ1	D	227	233	Right-handed alpha
Helix 146	AQ2	D	236	240	Right-handed 310
Helix 147	AQ3	D	254	264	Right-handed alpha
Helix 148	AQ4	D	281	296	Right-handed alpha

There are 8 sheets in PDB entry 8YG1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	267	270	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	395	396	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	215	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	346	348	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	166	169	parallel
Strand 3	C	128	131	parallel
Strand 4	C	42	46	parallel
Strand 5	C	212	215	parallel
Strand 6	C	244	246	parallel
Strand 7	C	267	269	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	128	131	parallel
Strand 4	D	43	46	parallel
Strand 5	D	213	216	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	267	270	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YG1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YG1