Analysis of interatomic Contacts of Structural Units in PDB entry:
8YG4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YG4 entry

There are 6 chains in PDB entry 8YG4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	LEU 361
B	GLU 3	SER 343
G	THR 6	ARG 62
N	GLN 1	HIS 129
P	ARG 1	HIS 32
R	VAL 31	LEU 481

There are 30 helices in PDB entry 8YG4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	33	Right-handed alpha
Helix 2	AA2	A	45	57	Right-handed alpha
Helix 3	AA3	A	210	216	Right-handed 310
Helix 4	AA4	A	232	245	Right-handed alpha
Helix 5	AA5	A	260	271	Right-handed alpha
Helix 6	AA6	A	274	279	Right-handed alpha
Helix 7	AA7	A	280	283	Right-handed 310
Helix 8	AA8	A	298	319	Right-handed alpha
Helix 9	AA9	A	336	358	Right-handed alpha
Helix 10	AB1	B	4	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	B	35	37	Right-handed 310
Helix 13	AB4	G	7	24	Right-handed alpha
Helix 14	AB5	G	29	44	Right-handed alpha
Helix 15	AB6	G	45	48	Right-handed 310
Helix 16	AB7	N	28	32	Right-handed 310
Helix 17	AB8	N	87	91	Right-handed 310
Helix 18	AB9	P	2	32	Right-handed alpha
Helix 19	AC1	R	34	46	Right-handed alpha
Helix 20	AC2	R	179	212	Right-handed alpha
Helix 21	AC3	R	217	245	Right-handed alpha
Helix 22	AC4	R	278	312	Right-handed alpha
Helix 23	AC5	R	319	329	Right-handed alpha
Helix 24	AC6	R	329	346	Right-handed alpha
Helix 25	AC7	R	360	391	Right-handed alpha
Helix 26	AC8	R	400	412	Right-handed alpha
Helix 27	AC9	R	412	418	Right-handed alpha
Helix 28	AD1	R	420	425	Right-handed alpha
Helix 29	AD2	R	434	460	Right-handed alpha
Helix 30	AD3	R	463	481	Right-handed alpha

There are 10 sheets in PDB entry 8YG4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	191	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	254	259	parallel
Strand 6	A	329	330	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	336	341	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	265	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YG4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YG4