Analysis of interatomic Contacts of Structural Units in PDB entry:
8YG6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YG6 entry

There are 3 chains in PDB entry 8YG6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 23	HIS 487
B	HIS 23	HIS 487
C	HIS 23	HIS 487

There are 18 helices in PDB entry 8YG6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	109	Right-handed alpha
Helix 2	AA2	A	126	130	Right-handed 310
Helix 3	AA3	A	298	342	Right-handed alpha
Helix 4	AA4	A	347	353	Right-handed alpha
Helix 5	AA5	A	439	456	Right-handed alpha
Helix 6	AA6	A	469	487	Right-handed alpha
Helix 7	AA7	B	98	109	Right-handed alpha
Helix 8	AA8	B	126	130	Right-handed 310
Helix 9	AA9	B	298	342	Right-handed alpha
Helix 10	AB1	B	347	353	Right-handed alpha
Helix 11	AB2	B	439	456	Right-handed alpha
Helix 12	AB3	B	469	487	Right-handed alpha
Helix 13	AB4	C	98	109	Right-handed alpha
Helix 14	AB5	C	126	130	Right-handed 310
Helix 15	AB6	C	298	342	Right-handed alpha
Helix 16	AB7	C	347	353	Right-handed alpha
Helix 17	AB8	C	439	456	Right-handed alpha
Helix 18	AB9	C	469	487	Right-handed alpha

There are 21 sheets in PDB entry 8YG6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	226	first strand
Strand 2	A	51	58	anti-parallel
Strand 3	A	267	269	anti-parallel
Strand 4	A	261	262	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	64	67	anti-parallel
Strand 3	A	209	213	anti-parallel
Strand 4	A	203	206	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	69	76	anti-parallel
Strand 3	A	156	162	anti-parallel
Strand 4	A	117	122	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	184	188	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	232	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	252	254	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	361	first strand
Strand 2	A	367	371	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	389	first strand
Strand 2	A	392	395	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	226	first strand
Strand 2	B	51	58	anti-parallel
Strand 3	B	267	269	anti-parallel
Strand 4	B	261	262	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	64	67	anti-parallel
Strand 3	B	209	213	anti-parallel
Strand 4	B	203	206	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	95	first strand
Strand 2	B	69	76	anti-parallel
Strand 3	B	156	162	anti-parallel
Strand 4	B	117	122	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	177	first strand
Strand 2	B	184	188	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	232	first strand
Strand 2	B	242	247	anti-parallel
Strand 3	B	252	254	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	361	first strand
Strand 2	B	367	371	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	389	first strand
Strand 2	B	392	395	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	226	first strand
Strand 2	C	51	58	anti-parallel
Strand 3	C	267	269	anti-parallel
Strand 4	C	261	262	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	64	67	anti-parallel
Strand 3	C	209	213	anti-parallel
Strand 4	C	203	206	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	95	first strand
Strand 2	C	69	76	anti-parallel
Strand 3	C	156	162	anti-parallel
Strand 4	C	117	122	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	177	first strand
Strand 2	C	184	188	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	232	first strand
Strand 2	C	242	247	anti-parallel
Strand 3	C	252	254	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	361	first strand
Strand 2	C	367	371	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	389	first strand
Strand 2	C	392	395	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YG6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YG6