Analysis of interatomic Contacts of Structural Units in PDB entry:
8YG8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YG8 entry

There are 3 chains in PDB entry 8YG8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 23	HIS 487
B	HIS 23	HIS 487
C	HIS 23	HIS 487

There are 23 helices in PDB entry 8YG8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	109	Right-handed alpha
Helix 2	AA2	A	126	130	Right-handed 310
Helix 3	AA3	A	298	342	Right-handed alpha
Helix 4	AA4	A	347	353	Right-handed alpha
Helix 5	AA5	A	439	456	Right-handed alpha
Helix 6	AA6	A	463	468	Right-handed 310
Helix 7	AA7	A	469	487	Right-handed alpha
Helix 8	AA8	B	98	109	Right-handed alpha
Helix 9	AA9	B	126	131	Right-handed alpha
Helix 10	AB1	B	190	194	Right-handed 310
Helix 11	AB2	B	298	342	Right-handed alpha
Helix 12	AB3	B	347	353	Right-handed alpha
Helix 13	AB4	B	439	456	Right-handed alpha
Helix 14	AB5	B	463	467	Right-handed 310
Helix 15	AB6	B	468	487	Right-handed alpha
Helix 16	AB7	C	98	109	Right-handed alpha
Helix 17	AB8	C	126	130	Right-handed 310
Helix 18	AB9	C	298	342	Right-handed alpha
Helix 19	AC1	C	347	353	Right-handed alpha
Helix 20	AC2	C	439	456	Right-handed alpha
Helix 21	AC3	C	463	467	Right-handed 310
Helix 22	AC4	C	468	472	Right-handed 310
Helix 23	AC5	C	473	487	Right-handed alpha

There are 22 sheets in PDB entry 8YG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	361	first strand
Strand 2	B	366	371	anti-parallel
Strand 3	A	33	35	anti-parallel
Strand 4	C	410	411	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	219	232	anti-parallel
Strand 4	A	51	58	anti-parallel
Strand 5	A	266	269	anti-parallel
Strand 6	A	261	263	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	94	first strand
Strand 2	A	64	76	anti-parallel
Strand 3	A	156	168	anti-parallel
Strand 4	A	120	122	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	94	first strand
Strand 2	A	64	76	anti-parallel
Strand 3	A	209	213	anti-parallel
Strand 4	A	203	206	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	184	188	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	361	first strand
Strand 2	A	367	371	anti-parallel
Strand 3	C	32	33	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	383	first strand
Strand 2	A	386	389	anti-parallel
Strand 3	A	392	395	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	411	first strand
Strand 2	B	33	35	parallel
Strand 3	C	366	371	anti-parallel
Strand 4	C	357	361	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	242	247	anti-parallel
Strand 3	B	219	232	anti-parallel
Strand 4	B	51	58	anti-parallel
Strand 5	B	266	269	anti-parallel
Strand 6	B	261	263	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	64	67	anti-parallel
Strand 3	B	210	213	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	70	77	anti-parallel
Strand 3	B	91	94	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	70	77	anti-parallel
Strand 3	B	156	162	anti-parallel
Strand 4	B	120	122	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	113	first strand
Strand 2	B	137	139	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	185	188	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	389	first strand
Strand 2	B	392	395	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	412	first strand
Strand 2	C	35	36	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	242	247	anti-parallel
Strand 3	C	219	232	anti-parallel
Strand 4	C	51	58	anti-parallel
Strand 5	C	266	269	anti-parallel
Strand 6	C	261	262	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	64	67	anti-parallel
Strand 3	C	209	213	anti-parallel
Strand 4	C	203	206	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	95	first strand
Strand 2	C	69	77	anti-parallel
Strand 3	C	156	162	anti-parallel
Strand 4	C	117	122	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	137	139	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	177	first strand
Strand 2	C	184	188	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	389	first strand
Strand 2	C	392	395	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YG8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YG8