Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YGA entry

There are 4 chains in PDB entry 8YGA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 11	ILE 1005
B	TYR 11	ILE 1005
C	TYR 11	ILE 1005
D	TYR 11	ILE 1005

There are251 helices in PDB entry 8YGA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	22	Right-handed alpha
Helix 2	AA2	A	23	39	Right-handed alpha
Helix 3	AA3	A	47	54	Right-handed alpha
Helix 4	AA4	A	58	70	Right-handed alpha
Helix 5	AA5	A	82	96	Right-handed alpha
Helix 6	AA6	A	96	107	Right-handed alpha
Helix 7	AA7	A	115	124	Right-handed alpha
Helix 8	AA8	A	136	146	Right-handed alpha
Helix 9	AA9	A	154	158	Right-handed 310
Helix 10	AB1	A	179	183	Right-handed 310
Helix 11	AB2	A	186	192	Right-handed alpha
Helix 12	AB3	A	197	210	Right-handed alpha
Helix 13	AB4	A	222	236	Right-handed alpha
Helix 14	AB5	A	254	264	Right-handed alpha
Helix 15	AB6	A	281	295	Right-handed alpha
Helix 16	AB7	A	304	317	Right-handed alpha
Helix 17	AB8	A	318	321	Right-handed 310
Helix 18	AB9	A	326	331	Right-handed alpha
Helix 19	AC1	A	332	335	Right-handed 310
Helix 20	AC2	A	355	366	Right-handed alpha
Helix 21	AC3	A	368	372	Right-handed 310
Helix 22	AC4	A	375	392	Right-handed alpha
Helix 23	AC5	A	411	416	Right-handed alpha
Helix 24	AC6	A	417	426	Right-handed alpha
Helix 25	AC7	A	431	446	Right-handed alpha
Helix 26	AC8	A	447	463	Right-handed alpha
Helix 27	AC9	A	468	496	Right-handed alpha
Helix 28	AD1	A	497	499	Right-handed 310
Helix 29	AD2	A	509	522	Right-handed alpha
Helix 30	AD3	A	523	525	Right-handed 310
Helix 31	AD4	A	526	531	Right-handed alpha
Helix 32	AD5	A	532	539	Right-handed alpha
Helix 33	AD6	A	540	544	Right-handed 310
Helix 34	AD7	A	548	552	Right-handed 310
Helix 35	AD8	A	554	572	Right-handed alpha
Helix 36	AD9	A	579	599	Right-handed alpha
Helix 37	AE1	A	600	604	Right-handed 310
Helix 38	AE2	A	605	629	Right-handed alpha
Helix 39	AE3	A	632	640	Right-handed alpha
Helix 40	AE4	A	648	659	Right-handed alpha
Helix 41	AE5	A	660	671	Right-handed alpha
Helix 42	AE6	A	672	676	Right-handed 310
Helix 43	AE7	A	680	699	Right-handed alpha
Helix 44	AE8	A	705	723	Right-handed alpha
Helix 45	AE9	A	724	726	Right-handed 310
Helix 46	AF1	A	729	743	Right-handed alpha
Helix 47	AF2	A	750	763	Right-handed alpha
Helix 48	AF3	A	768	786	Right-handed alpha
Helix 49	AF4	A	800	812	Right-handed alpha
Helix 50	AF5	A	817	825	Right-handed alpha
Helix 51	AF6	A	832	840	Right-handed alpha
Helix 52	AF7	A	846	856	Right-handed alpha
Helix 53	AF8	A	861	863	Right-handed 310
Helix 54	AF9	A	864	871	Right-handed alpha
Helix 55	AG1	A	878	903	Right-handed alpha
Helix 56	AG2	A	912	922	Right-handed alpha
Helix 57	AG3	A	928	933	Right-handed alpha
Helix 58	AG4	A	937	945	Right-handed alpha
Helix 59	AG5	A	950	954	Right-handed 310
Helix 60	AG6	A	955	961	Right-handed 310
Helix 61	AG7	A	963	972	Right-handed alpha
Helix 62	AG8	A	976	991	Right-handed alpha
Helix 63	AG9	A	993	1003	Right-handed alpha
Helix 64	AH1	B	12	20	Right-handed alpha
Helix 65	AH2	B	23	39	Right-handed alpha
Helix 66	AH3	B	47	54	Right-handed alpha
Helix 67	AH4	B	58	71	Right-handed alpha
Helix 68	AH5	B	85	96	Right-handed alpha
Helix 69	AH6	B	96	109	Right-handed alpha
Helix 70	AH7	B	115	124	Right-handed alpha
Helix 71	AH8	B	136	145	Right-handed alpha
Helix 72	AH9	B	155	160	Right-handed alpha
Helix 73	AI1	B	179	183	Right-handed 310
Helix 74	AI2	B	186	192	Right-handed alpha
Helix 75	AI3	B	192	197	Right-handed alpha
Helix 76	AI4	B	197	211	Right-handed alpha
Helix 77	AI5	B	223	236	Right-handed alpha
Helix 78	AI6	B	254	264	Right-handed alpha
Helix 79	AI7	B	281	295	Right-handed alpha
Helix 80	AI8	B	304	317	Right-handed alpha
Helix 81	AI9	B	318	322	Right-handed 310
Helix 82	AJ1	B	329	334	Right-handed alpha
Helix 83	AJ2	B	355	366	Right-handed alpha
Helix 84	AJ3	B	368	372	Right-handed 310
Helix 85	AJ4	B	376	392	Right-handed alpha
Helix 86	AJ5	B	396	400	Right-handed 310
Helix 87	AJ6	B	411	416	Right-handed alpha
Helix 88	AJ7	B	417	426	Right-handed alpha
Helix 89	AJ8	B	431	445	Right-handed alpha
Helix 90	AJ9	B	447	462	Right-handed alpha
Helix 91	AK1	B	468	496	Right-handed alpha
Helix 92	AK2	B	497	499	Right-handed 310
Helix 93	AK3	B	508	520	Right-handed alpha
Helix 94	AK4	B	523	525	Right-handed 310
Helix 95	AK5	B	526	531	Right-handed alpha
Helix 96	AK6	B	532	539	Right-handed alpha
Helix 97	AK7	B	540	546	Right-handed 310
Helix 98	AK8	B	554	559	Right-handed alpha
Helix 99	AK9	B	560	562	Right-handed 310
Helix 100	AL1	B	566	572	Right-handed alpha
Helix 101	AL2	B	579	598	Right-handed alpha
Helix 102	AL3	B	600	604	Right-handed 310
Helix 103	AL4	B	605	621	Right-handed alpha
Helix 104	AL5	B	633	639	Right-handed alpha
Helix 105	AL6	B	648	658	Right-handed alpha
Helix 106	AL7	B	660	671	Right-handed alpha
Helix 107	AL8	B	672	676	Right-handed 310
Helix 108	AL9	B	680	700	Right-handed alpha
Helix 109	AM1	B	705	723	Right-handed alpha
Helix 110	AM2	B	724	726	Right-handed 310
Helix 111	AM3	B	729	744	Right-handed alpha
Helix 112	AM4	B	750	765	Right-handed alpha
Helix 113	AM5	B	769	785	Right-handed alpha
Helix 114	AM6	B	800	812	Right-handed alpha
Helix 115	AM7	B	818	826	Right-handed alpha
Helix 116	AM8	B	833	841	Right-handed alpha
Helix 117	AM9	B	846	855	Right-handed alpha
Helix 118	AN1	B	861	871	Right-handed alpha
Helix 119	AN2	B	878	903	Right-handed alpha
Helix 120	AN3	B	911	922	Right-handed alpha
Helix 121	AN4	B	928	933	Right-handed alpha
Helix 122	AN5	B	937	945	Right-handed alpha
Helix 123	AN6	B	950	954	Right-handed 310
Helix 124	AN7	B	955	962	Right-handed 310
Helix 125	AN8	B	963	973	Right-handed alpha
Helix 126	AN9	B	975	991	Right-handed alpha
Helix 127	AO1	B	993	1003	Right-handed alpha
Helix 128	AO2	C	12	22	Right-handed alpha
Helix 129	AO3	C	23	39	Right-handed alpha
Helix 130	AO4	C	47	54	Right-handed alpha
Helix 131	AO5	C	60	70	Right-handed alpha
Helix 132	AO6	C	82	96	Right-handed alpha
Helix 133	AO7	C	96	108	Right-handed alpha
Helix 134	AO8	C	115	124	Right-handed alpha
Helix 135	AO9	C	136	146	Right-handed alpha
Helix 136	AP1	C	154	161	Right-handed 310
Helix 137	AP2	C	179	183	Right-handed 310
Helix 138	AP3	C	187	192	Right-handed alpha
Helix 139	AP4	C	192	197	Right-handed alpha
Helix 140	AP5	C	197	210	Right-handed alpha
Helix 141	AP6	C	222	236	Right-handed alpha
Helix 142	AP7	C	254	265	Right-handed alpha
Helix 143	AP8	C	281	295	Right-handed alpha
Helix 144	AP9	C	304	317	Right-handed alpha
Helix 145	AQ1	C	318	322	Right-handed 310
Helix 146	AQ2	C	326	334	Right-handed alpha
Helix 147	AQ3	C	355	366	Right-handed alpha
Helix 148	AQ4	C	368	372	Right-handed 310
Helix 149	AQ5	C	375	392	Right-handed alpha
Helix 150	AQ6	C	411	416	Right-handed 310
Helix 151	AQ7	C	417	426	Right-handed alpha
Helix 152	AQ8	C	431	446	Right-handed alpha
Helix 153	AQ9	C	447	462	Right-handed alpha
Helix 154	AR1	C	468	496	Right-handed alpha
Helix 155	AR2	C	497	500	Right-handed 310
Helix 156	AR3	C	508	520	Right-handed alpha
Helix 157	AR4	C	526	531	Right-handed alpha
Helix 158	AR5	C	532	539	Right-handed alpha
Helix 159	AR6	C	549	554	Right-handed alpha
Helix 160	AR7	C	555	572	Right-handed alpha
Helix 161	AR8	C	579	598	Right-handed alpha
Helix 162	AR9	C	600	604	Right-handed 310
Helix 163	AS1	C	605	629	Right-handed alpha
Helix 164	AS2	C	632	640	Right-handed alpha
Helix 165	AS3	C	648	658	Right-handed alpha
Helix 166	AS4	C	660	671	Right-handed alpha
Helix 167	AS5	C	672	676	Right-handed 310
Helix 168	AS6	C	680	699	Right-handed alpha
Helix 169	AS7	C	705	723	Right-handed alpha
Helix 170	AS8	C	724	726	Right-handed 310
Helix 171	AS9	C	729	743	Right-handed alpha
Helix 172	AT1	C	750	763	Right-handed alpha
Helix 173	AT2	C	768	786	Right-handed alpha
Helix 174	AT3	C	800	812	Right-handed alpha
Helix 175	AT4	C	817	825	Right-handed alpha
Helix 176	AT5	C	832	840	Right-handed alpha
Helix 177	AT6	C	847	856	Right-handed alpha
Helix 178	AT7	C	861	863	Right-handed 310
Helix 179	AT8	C	864	871	Right-handed alpha
Helix 180	AT9	C	878	903	Right-handed alpha
Helix 181	AU1	C	912	922	Right-handed alpha
Helix 182	AU2	C	928	933	Right-handed alpha
Helix 183	AU3	C	937	945	Right-handed alpha
Helix 184	AU4	C	950	954	Right-handed 310
Helix 185	AU5	C	955	962	Right-handed 310
Helix 186	AU6	C	963	973	Right-handed alpha
Helix 187	AU7	C	975	990	Right-handed alpha
Helix 188	AU8	C	993	1003	Right-handed alpha
Helix 189	AU9	D	12	22	Right-handed alpha
Helix 190	AV1	D	23	39	Right-handed alpha
Helix 191	AV2	D	47	54	Right-handed alpha
Helix 192	AV3	D	58	71	Right-handed alpha
Helix 193	AV4	D	86	96	Right-handed alpha
Helix 194	AV5	D	96	109	Right-handed alpha
Helix 195	AV6	D	115	124	Right-handed alpha
Helix 196	AV7	D	136	145	Right-handed alpha
Helix 197	AV8	D	155	160	Right-handed 310
Helix 198	AV9	D	173	177	Right-handed 310
Helix 199	AW1	D	179	183	Right-handed 310
Helix 200	AW2	D	186	192	Right-handed alpha
Helix 201	AW3	D	192	197	Right-handed alpha
Helix 202	AW4	D	197	211	Right-handed alpha
Helix 203	AW5	D	223	235	Right-handed alpha
Helix 204	AW6	D	254	264	Right-handed alpha
Helix 205	AW7	D	271	275	Right-handed alpha
Helix 206	AW8	D	281	296	Right-handed alpha
Helix 207	AW9	D	304	317	Right-handed alpha
Helix 208	AX1	D	318	322	Right-handed 310
Helix 209	AX2	D	329	334	Right-handed alpha
Helix 210	AX3	D	355	366	Right-handed alpha
Helix 211	AX4	D	367	372	Right-handed 310
Helix 212	AX5	D	377	392	Right-handed alpha
Helix 213	AX6	D	411	416	Right-handed alpha
Helix 214	AX7	D	417	426	Right-handed alpha
Helix 215	AX8	D	431	446	Right-handed alpha
Helix 216	AX9	D	447	463	Right-handed alpha
Helix 217	AY1	D	468	496	Right-handed alpha
Helix 218	AY2	D	497	499	Right-handed 310
Helix 219	AY3	D	508	520	Right-handed alpha
Helix 220	AY4	D	526	531	Right-handed alpha
Helix 221	AY5	D	532	539	Right-handed alpha
Helix 222	AY6	D	540	547	Right-handed 310
Helix 223	AY7	D	556	562	Right-handed 310
Helix 224	AY8	D	567	572	Right-handed alpha
Helix 225	AY9	D	579	598	Right-handed alpha
Helix 226	AZ1	D	600	604	Right-handed 310
Helix 227	AZ2	D	605	621	Right-handed alpha
Helix 228	AZ3	D	633	639	Right-handed alpha
Helix 229	AZ4	D	648	659	Right-handed alpha
Helix 230	AZ5	D	660	671	Right-handed alpha
Helix 231	AZ6	D	672	676	Right-handed 310
Helix 232	AZ7	D	680	701	Right-handed alpha
Helix 233	AZ8	D	705	723	Right-handed alpha
Helix 234	AZ9	D	724	726	Right-handed 310
Helix 235	BA1	D	729	743	Right-handed alpha
Helix 236	BA2	D	750	763	Right-handed alpha
Helix 237	BA3	D	769	786	Right-handed alpha
Helix 238	BA4	D	800	812	Right-handed alpha
Helix 239	BA5	D	818	826	Right-handed alpha
Helix 240	BA6	D	833	839	Right-handed alpha
Helix 241	BA7	D	846	855	Right-handed alpha
Helix 242	BA8	D	861	871	Right-handed alpha
Helix 243	BA9	D	878	903	Right-handed alpha
Helix 244	BB1	D	911	922	Right-handed alpha
Helix 245	BB2	D	928	933	Right-handed alpha
Helix 246	BB3	D	937	945	Right-handed alpha
Helix 247	BB4	D	950	954	Right-handed 310
Helix 248	BB5	D	955	962	Right-handed 310
Helix 249	BB6	D	963	973	Right-handed alpha
Helix 250	BB7	D	975	990	Right-handed alpha
Helix 251	BB8	D	993	1003	Right-handed alpha

There are 10 sheets in PDB entry 8YGA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	215	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	246	first strand
Strand 2	A	267	269	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	395	396	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	267	270	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	346	348	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	166	169	parallel
Strand 3	C	128	131	parallel
Strand 4	C	42	46	parallel
Strand 5	C	212	216	parallel
Strand 6	C	244	247	parallel
Strand 7	C	267	270	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	340	first strand
Strand 2	C	345	348	anti-parallel
Strand 3	C	395	396	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	128	131	parallel
Strand 4	D	42	46	parallel
Strand 5	D	212	215	parallel
Strand 6	D	244	247	parallel
Strand 7	D	267	270	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	341	first strand
Strand 2	D	345	348	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YGA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGA