Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YGA entry

There are 4 chains in PDB entry 8YGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 11ILE 1005
B
TYR 11ILE 1005
C
TYR 11ILE 1005
D
TYR 11ILE 1005
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are251 helices in PDB entry 8YGA. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
11 22Right-handed alpha
Helix 2
AA2
A
23 39Right-handed alpha
Helix 3
AA3
A
47 54Right-handed alpha
Helix 4
AA4
A
58 70Right-handed alpha
Helix 5
AA5
A
82 96Right-handed alpha
Helix 6
AA6
A
96 107Right-handed alpha
Helix 7
AA7
A
115 124Right-handed alpha
Helix 8
AA8
A
136 146Right-handed alpha
Helix 9
AA9
A
154 158Right-handed 310
Helix 10
AB1
A
179 183Right-handed 310
Helix 11
AB2
A
186 192Right-handed alpha
Helix 12
AB3
A
197 210Right-handed alpha
Helix 13
AB4
A
222 236Right-handed alpha
Helix 14
AB5
A
254 264Right-handed alpha
Helix 15
AB6
A
281 295Right-handed alpha
Helix 16
AB7
A
304 317Right-handed alpha
Helix 17
AB8
A
318 321Right-handed 310
Helix 18
AB9
A
326 331Right-handed alpha
Helix 19
AC1
A
332 335Right-handed 310
Helix 20
AC2
A
355 366Right-handed alpha
Helix 21
AC3
A
368 372Right-handed 310
Helix 22
AC4
A
375 392Right-handed alpha
Helix 23
AC5
A
411 416Right-handed alpha
Helix 24
AC6
A
417 426Right-handed alpha
Helix 25
AC7
A
431 446Right-handed alpha
Helix 26
AC8
A
447 463Right-handed alpha
Helix 27
AC9
A
468 496Right-handed alpha
Helix 28
AD1
A
497 499Right-handed 310
Helix 29
AD2
A
509 522Right-handed alpha
Helix 30
AD3
A
523 525Right-handed 310
Helix 31
AD4
A
526 531Right-handed alpha
Helix 32
AD5
A
532 539Right-handed alpha
Helix 33
AD6
A
540 544Right-handed 310
Helix 34
AD7
A
548 552Right-handed 310
Helix 35
AD8
A
554 572Right-handed alpha
Helix 36
AD9
A
579 599Right-handed alpha
Helix 37
AE1
A
600 604Right-handed 310
Helix 38
AE2
A
605 629Right-handed alpha
Helix 39
AE3
A
632 640Right-handed alpha
Helix 40
AE4
A
648 659Right-handed alpha
Helix 41
AE5
A
660 671Right-handed alpha
Helix 42
AE6
A
672 676Right-handed 310
Helix 43
AE7
A
680 699Right-handed alpha
Helix 44
AE8
A
705 723Right-handed alpha
Helix 45
AE9
A
724 726Right-handed 310
Helix 46
AF1
A
729 743Right-handed alpha
Helix 47
AF2
A
750 763Right-handed alpha
Helix 48
AF3
A
768 786Right-handed alpha
Helix 49
AF4
A
800 812Right-handed alpha
Helix 50
AF5
A
817 825Right-handed alpha
Helix 51
AF6
A
832 840Right-handed alpha
Helix 52
AF7
A
846 856Right-handed alpha
Helix 53
AF8
A
861 863Right-handed 310
Helix 54
AF9
A
864 871Right-handed alpha
Helix 55
AG1
A
878 903Right-handed alpha
Helix 56
AG2
A
912 922Right-handed alpha
Helix 57
AG3
A
928 933Right-handed alpha
Helix 58
AG4
A
937 945Right-handed alpha
Helix 59
AG5
A
950 954Right-handed 310
Helix 60
AG6
A
955 961Right-handed 310
Helix 61
AG7
A
963 972Right-handed alpha
Helix 62
AG8
A
976 991Right-handed alpha
Helix 63
AG9
A
993 1003Right-handed alpha
Helix 64
AH1
B
12 20Right-handed alpha
Helix 65
AH2
B
23 39Right-handed alpha
Helix 66
AH3
B
47 54Right-handed alpha
Helix 67
AH4
B
58 71Right-handed alpha
Helix 68
AH5
B
85 96Right-handed alpha
Helix 69
AH6
B
96 109Right-handed alpha
Helix 70
AH7
B
115 124Right-handed alpha
Helix 71
AH8
B
136 145Right-handed alpha
Helix 72
AH9
B
155 160Right-handed alpha
Helix 73
AI1
B
179 183Right-handed 310
Helix 74
AI2
B
186 192Right-handed alpha
Helix 75
AI3
B
192 197Right-handed alpha
Helix 76
AI4
B
197 211Right-handed alpha
Helix 77
AI5
B
223 236Right-handed alpha
Helix 78
AI6
B
254 264Right-handed alpha
Helix 79
AI7
B
281 295Right-handed alpha
Helix 80
AI8
B
304 317Right-handed alpha
Helix 81
AI9
B
318 322Right-handed 310
Helix 82
AJ1
B
329 334Right-handed alpha
Helix 83
AJ2
B
355 366Right-handed alpha
Helix 84
AJ3
B
368 372Right-handed 310
Helix 85
AJ4
B
376 392Right-handed alpha
Helix 86
AJ5
B
396 400Right-handed 310
Helix 87
AJ6
B
411 416Right-handed alpha
Helix 88
AJ7
B
417 426Right-handed alpha
Helix 89
AJ8
B
431 445Right-handed alpha
Helix 90
AJ9
B
447 462Right-handed alpha
Helix 91
AK1
B
468 496Right-handed alpha
Helix 92
AK2
B
497 499Right-handed 310
Helix 93
AK3
B
508 520Right-handed alpha
Helix 94
AK4
B
523 525Right-handed 310
Helix 95
AK5
B
526 531Right-handed alpha
Helix 96
AK6
B
532 539Right-handed alpha
Helix 97
AK7
B
540 546Right-handed 310
Helix 98
AK8
B
554 559Right-handed alpha
Helix 99
AK9
B
560 562Right-handed 310
Helix 100
AL1
B
566 572Right-handed alpha
Helix 101
AL2
B
579 598Right-handed alpha
Helix 102
AL3
B
600 604Right-handed 310
Helix 103
AL4
B
605 621Right-handed alpha
Helix 104
AL5
B
633 639Right-handed alpha
Helix 105
AL6
B
648 658Right-handed alpha
Helix 106
AL7
B
660 671Right-handed alpha
Helix 107
AL8
B
672 676Right-handed 310
Helix 108
AL9
B
680 700Right-handed alpha
Helix 109
AM1
B
705 723Right-handed alpha
Helix 110
AM2
B
724 726Right-handed 310
Helix 111
AM3
B
729 744Right-handed alpha
Helix 112
AM4
B
750 765Right-handed alpha
Helix 113
AM5
B
769 785Right-handed alpha
Helix 114
AM6
B
800 812Right-handed alpha
Helix 115
AM7
B
818 826Right-handed alpha
Helix 116
AM8
B
833 841Right-handed alpha
Helix 117
AM9
B
846 855Right-handed alpha
Helix 118
AN1
B
861 871Right-handed alpha
Helix 119
AN2
B
878 903Right-handed alpha
Helix 120
AN3
B
911 922Right-handed alpha
Helix 121
AN4
B
928 933Right-handed alpha
Helix 122
AN5
B
937 945Right-handed alpha
Helix 123
AN6
B
950 954Right-handed 310
Helix 124
AN7
B
955 962Right-handed 310
Helix 125
AN8
B
963 973Right-handed alpha
Helix 126
AN9
B
975 991Right-handed alpha
Helix 127
AO1
B
993 1003Right-handed alpha
Helix 128
AO2
C
12 22Right-handed alpha
Helix 129
AO3
C
23 39Right-handed alpha
Helix 130
AO4
C
47 54Right-handed alpha
Helix 131
AO5
C
60 70Right-handed alpha
Helix 132
AO6
C
82 96Right-handed alpha
Helix 133
AO7
C
96 108Right-handed alpha
Helix 134
AO8
C
115 124Right-handed alpha
Helix 135
AO9
C
136 146Right-handed alpha
Helix 136
AP1
C
154 161Right-handed 310
Helix 137
AP2
C
179 183Right-handed 310
Helix 138
AP3
C
187 192Right-handed alpha
Helix 139
AP4
C
192 197Right-handed alpha
Helix 140
AP5
C
197 210Right-handed alpha
Helix 141
AP6
C
222 236Right-handed alpha
Helix 142
AP7
C
254 265Right-handed alpha
Helix 143
AP8
C
281 295Right-handed alpha
Helix 144
AP9
C
304 317Right-handed alpha
Helix 145
AQ1
C
318 322Right-handed 310
Helix 146
AQ2
C
326 334Right-handed alpha
Helix 147
AQ3
C
355 366Right-handed alpha
Helix 148
AQ4
C
368 372Right-handed 310
Helix 149
AQ5
C
375 392Right-handed alpha
Helix 150
AQ6
C
411 416Right-handed 310
Helix 151
AQ7
C
417 426Right-handed alpha
Helix 152
AQ8
C
431 446Right-handed alpha
Helix 153
AQ9
C
447 462Right-handed alpha
Helix 154
AR1
C
468 496Right-handed alpha
Helix 155
AR2
C
497 500Right-handed 310
Helix 156
AR3
C
508 520Right-handed alpha
Helix 157
AR4
C
526 531Right-handed alpha
Helix 158
AR5
C
532 539Right-handed alpha
Helix 159
AR6
C
549 554Right-handed alpha
Helix 160
AR7
C
555 572Right-handed alpha
Helix 161
AR8
C
579 598Right-handed alpha
Helix 162
AR9
C
600 604Right-handed 310
Helix 163
AS1
C
605 629Right-handed alpha
Helix 164
AS2
C
632 640Right-handed alpha
Helix 165
AS3
C
648 658Right-handed alpha
Helix 166
AS4
C
660 671Right-handed alpha
Helix 167
AS5
C
672 676Right-handed 310
Helix 168
AS6
C
680 699Right-handed alpha
Helix 169
AS7
C
705 723Right-handed alpha
Helix 170
AS8
C
724 726Right-handed 310
Helix 171
AS9
C
729 743Right-handed alpha
Helix 172
AT1
C
750 763Right-handed alpha
Helix 173
AT2
C
768 786Right-handed alpha
Helix 174
AT3
C
800 812Right-handed alpha
Helix 175
AT4
C
817 825Right-handed alpha
Helix 176
AT5
C
832 840Right-handed alpha
Helix 177
AT6
C
847 856Right-handed alpha
Helix 178
AT7
C
861 863Right-handed 310
Helix 179
AT8
C
864 871Right-handed alpha
Helix 180
AT9
C
878 903Right-handed alpha
Helix 181
AU1
C
912 922Right-handed alpha
Helix 182
AU2
C
928 933Right-handed alpha
Helix 183
AU3
C
937 945Right-handed alpha
Helix 184
AU4
C
950 954Right-handed 310
Helix 185
AU5
C
955 962Right-handed 310
Helix 186
AU6
C
963 973Right-handed alpha
Helix 187
AU7
C
975 990Right-handed alpha
Helix 188
AU8
C
993 1003Right-handed alpha
Helix 189
AU9
D
12 22Right-handed alpha
Helix 190
AV1
D
23 39Right-handed alpha
Helix 191
AV2
D
47 54Right-handed alpha
Helix 192
AV3
D
58 71Right-handed alpha
Helix 193
AV4
D
86 96Right-handed alpha
Helix 194
AV5
D
96 109Right-handed alpha
Helix 195
AV6
D
115 124Right-handed alpha
Helix 196
AV7
D
136 145Right-handed alpha
Helix 197
AV8
D
155 160Right-handed 310
Helix 198
AV9
D
173 177Right-handed 310
Helix 199
AW1
D
179 183Right-handed 310
Helix 200
AW2
D
186 192Right-handed alpha
Helix 201
AW3
D
192 197Right-handed alpha
Helix 202
AW4
D
197 211Right-handed alpha
Helix 203
AW5
D
223 235Right-handed alpha
Helix 204
AW6
D
254 264Right-handed alpha
Helix 205
AW7
D
271 275Right-handed alpha
Helix 206
AW8
D
281 296Right-handed alpha
Helix 207
AW9
D
304 317Right-handed alpha
Helix 208
AX1
D
318 322Right-handed 310
Helix 209
AX2
D
329 334Right-handed alpha
Helix 210
AX3
D
355 366Right-handed alpha
Helix 211
AX4
D
367 372Right-handed 310
Helix 212
AX5
D
377 392Right-handed alpha
Helix 213
AX6
D
411 416Right-handed alpha
Helix 214
AX7
D
417 426Right-handed alpha
Helix 215
AX8
D
431 446Right-handed alpha
Helix 216
AX9
D
447 463Right-handed alpha
Helix 217
AY1
D
468 496Right-handed alpha
Helix 218
AY2
D
497 499Right-handed 310
Helix 219
AY3
D
508 520Right-handed alpha
Helix 220
AY4
D
526 531Right-handed alpha
Helix 221
AY5
D
532 539Right-handed alpha
Helix 222
AY6
D
540 547Right-handed 310
Helix 223
AY7
D
556 562Right-handed 310
Helix 224
AY8
D
567 572Right-handed alpha
Helix 225
AY9
D
579 598Right-handed alpha
Helix 226
AZ1
D
600 604Right-handed 310
Helix 227
AZ2
D
605 621Right-handed alpha
Helix 228
AZ3
D
633 639Right-handed alpha
Helix 229
AZ4
D
648 659Right-handed alpha
Helix 230
AZ5
D
660 671Right-handed alpha
Helix 231
AZ6
D
672 676Right-handed 310
Helix 232
AZ7
D
680 701Right-handed alpha
Helix 233
AZ8
D
705 723Right-handed alpha
Helix 234
AZ9
D
724 726Right-handed 310
Helix 235
BA1
D
729 743Right-handed alpha
Helix 236
BA2
D
750 763Right-handed alpha
Helix 237
BA3
D
769 786Right-handed alpha
Helix 238
BA4
D
800 812Right-handed alpha
Helix 239
BA5
D
818 826Right-handed alpha
Helix 240
BA6
D
833 839Right-handed alpha
Helix 241
BA7
D
846 855Right-handed alpha
Helix 242
BA8
D
861 871Right-handed alpha
Helix 243
BA9
D
878 903Right-handed alpha
Helix 244
BB1
D
911 922Right-handed alpha
Helix 245
BB2
D
928 933Right-handed alpha
Helix 246
BB3
D
937 945Right-handed alpha
Helix 247
BB4
D
950 954Right-handed 310
Helix 248
BB5
D
955 962Right-handed 310
Helix 249
BB6
D
963 973Right-handed alpha
Helix 250
BB7
D
975 990Right-handed alpha
Helix 251
BB8
D
993 1003Right-handed alpha
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There are 10 sheets in PDB entry 8YGA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
150 152first strand
Strand 2
A
166 169parallel
Strand 3
A
128 131parallel
Strand 4
A
42 46parallel
Strand 5
A
212 215parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
244 246first strand
Strand 2
A
267 269parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
338 340first strand
Strand 2
A
345 348anti-parallel
Strand 3
A
395 396parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
150 152first strand
Strand 2
B
166 169parallel
Strand 3
B
128 131parallel
Strand 4
B
42 46parallel
Strand 5
B
212 216parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
244 247first strand
Strand 2
B
267 270parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
338 340first strand
Strand 2
B
346 348anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
150 152first strand
Strand 2
C
166 169parallel
Strand 3
C
128 131parallel
Strand 4
C
42 46parallel
Strand 5
C
212 216parallel
Strand 6
C
244 247parallel
Strand 7
C
267 270parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
338 340first strand
Strand 2
C
345 348anti-parallel
Strand 3
C
395 396parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
150 152first strand
Strand 2
D
166 169parallel
Strand 3
D
128 131parallel
Strand 4
D
42 46parallel
Strand 5
D
212 215parallel
Strand 6
D
244 247parallel
Strand 7
D
267 270parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
338 341first strand
Strand 2
D
345 348anti-parallel
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