Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YGC entry

There are 6 chains in PDB entry 8YGC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	ILE 1005
B	ASP 23	ILE 1005
C	MET 1	ASP 240
D	MET 1	ASP 240
E	MET 21	GLN 297
F	VAL 26	GLN 297

There are160 helices in PDB entry 8YGC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	39	Right-handed alpha
Helix 2	AA2	A	47	52	Right-handed alpha
Helix 3	AA3	A	53	55	Right-handed 310
Helix 4	AA4	A	58	72	Right-handed alpha
Helix 5	AA5	A	80	95	Right-handed alpha
Helix 6	AA6	A	96	109	Right-handed alpha
Helix 7	AA7	A	115	124	Right-handed alpha
Helix 8	AA8	A	136	146	Right-handed alpha
Helix 9	AA9	A	156	161	Right-handed alpha
Helix 10	AB1	A	179	183	Right-handed 310
Helix 11	AB2	A	186	192	Right-handed alpha
Helix 12	AB3	A	192	197	Right-handed alpha
Helix 13	AB4	A	197	210	Right-handed alpha
Helix 14	AB5	A	222	237	Right-handed alpha
Helix 15	AB6	A	238	240	Right-handed 310
Helix 16	AB7	A	254	265	Right-handed alpha
Helix 17	AB8	A	271	275	Right-handed alpha
Helix 18	AB9	A	281	294	Right-handed alpha
Helix 19	AC1	A	308	317	Right-handed alpha
Helix 20	AC2	A	318	321	Right-handed 310
Helix 21	AC3	A	329	334	Right-handed alpha
Helix 22	AC4	A	357	366	Right-handed alpha
Helix 23	AC5	A	368	373	Right-handed 310
Helix 24	AC6	A	374	391	Right-handed alpha
Helix 25	AC7	A	417	426	Right-handed alpha
Helix 26	AC8	A	431	445	Right-handed alpha
Helix 27	AC9	A	449	462	Right-handed alpha
Helix 28	AD1	A	467	495	Right-handed alpha
Helix 29	AD2	A	495	500	Right-handed alpha
Helix 30	AD3	A	508	519	Right-handed alpha
Helix 31	AD4	A	520	522	Right-handed 310
Helix 32	AD5	A	526	531	Right-handed alpha
Helix 33	AD6	A	532	539	Right-handed alpha
Helix 34	AD7	A	540	546	Right-handed 310
Helix 35	AD8	A	548	572	Right-handed alpha
Helix 36	AD9	A	579	598	Right-handed alpha
Helix 37	AE1	A	600	604	Right-handed 310
Helix 38	AE2	A	605	628	Right-handed alpha
Helix 39	AE3	A	634	639	Right-handed alpha
Helix 40	AE4	A	648	659	Right-handed alpha
Helix 41	AE5	A	660	669	Right-handed alpha
Helix 42	AE6	A	680	701	Right-handed alpha
Helix 43	AE7	A	705	711	Right-handed alpha
Helix 44	AE8	A	712	723	Right-handed alpha
Helix 45	AE9	A	724	726	Right-handed 310
Helix 46	AF1	A	729	742	Right-handed alpha
Helix 47	AF2	A	750	761	Right-handed alpha
Helix 48	AF3	A	768	786	Right-handed alpha
Helix 49	AF4	A	799	812	Right-handed alpha
Helix 50	AF5	A	817	826	Right-handed alpha
Helix 51	AF6	A	831	838	Right-handed alpha
Helix 52	AF7	A	841	845	Right-handed 310
Helix 53	AF8	A	846	855	Right-handed alpha
Helix 54	AF9	A	861	871	Right-handed alpha
Helix 55	AG1	A	878	903	Right-handed alpha
Helix 56	AG2	A	912	922	Right-handed alpha
Helix 57	AG3	A	928	934	Right-handed 310
Helix 58	AG4	A	937	945	Right-handed alpha
Helix 59	AG5	A	950	954	Right-handed 310
Helix 60	AG6	A	955	962	Right-handed 310
Helix 61	AG7	A	963	970	Right-handed alpha
Helix 62	AG8	A	973	977	Right-handed 310
Helix 63	AG9	A	979	991	Right-handed alpha
Helix 64	AH1	A	993	1003	Right-handed alpha
Helix 65	AH2	B	24	39	Right-handed alpha
Helix 66	AH3	B	47	52	Right-handed alpha
Helix 67	AH4	B	53	55	Right-handed 310
Helix 68	AH5	B	58	72	Right-handed alpha
Helix 69	AH6	B	80	109	Right-handed alpha
Helix 70	AH7	B	115	125	Right-handed alpha
Helix 71	AH8	B	136	145	Right-handed alpha
Helix 72	AH9	B	156	160	Right-handed 310
Helix 73	AI1	B	179	183	Right-handed 310
Helix 74	AI2	B	186	192	Right-handed alpha
Helix 75	AI3	B	192	197	Right-handed alpha
Helix 76	AI4	B	197	211	Right-handed alpha
Helix 77	AI5	B	222	237	Right-handed alpha
Helix 78	AI6	B	238	240	Right-handed 310
Helix 79	AI7	B	254	265	Right-handed alpha
Helix 80	AI8	B	281	295	Right-handed alpha
Helix 81	AI9	B	297	302	Right-handed 310
Helix 82	AJ1	B	304	317	Right-handed alpha
Helix 83	AJ2	B	318	322	Right-handed 310
Helix 84	AJ3	B	326	328	Right-handed 310
Helix 85	AJ4	B	329	334	Right-handed alpha
Helix 86	AJ5	B	355	366	Right-handed alpha
Helix 87	AJ6	B	366	371	Right-handed alpha
Helix 88	AJ7	B	374	392	Right-handed alpha
Helix 89	AJ8	B	396	400	Right-handed 310
Helix 90	AJ9	B	417	427	Right-handed alpha
Helix 91	AK1	B	431	445	Right-handed alpha
Helix 92	AK2	B	447	462	Right-handed alpha
Helix 93	AK3	B	463	466	Right-handed 310
Helix 94	AK4	B	468	495	Right-handed alpha
Helix 95	AK5	B	495	501	Right-handed alpha
Helix 96	AK6	B	508	519	Right-handed alpha
Helix 97	AK7	B	523	525	Right-handed 310
Helix 98	AK8	B	526	531	Right-handed alpha
Helix 99	AK9	B	534	539	Right-handed alpha
Helix 100	AL1	B	540	544	Right-handed 310
Helix 101	AL2	B	549	570	Right-handed alpha
Helix 102	AL3	B	581	598	Right-handed alpha
Helix 103	AL4	B	601	604	Right-handed 310
Helix 104	AL5	B	605	628	Right-handed alpha
Helix 105	AL6	B	648	658	Right-handed alpha
Helix 106	AL7	B	660	671	Right-handed alpha
Helix 107	AL8	B	672	676	Right-handed 310
Helix 108	AL9	B	682	701	Right-handed alpha
Helix 109	AM1	B	705	723	Right-handed alpha
Helix 110	AM2	B	724	726	Right-handed 310
Helix 111	AM3	B	729	743	Right-handed alpha
Helix 112	AM4	B	750	761	Right-handed alpha
Helix 113	AM5	B	768	786	Right-handed alpha
Helix 114	AM6	B	800	812	Right-handed alpha
Helix 115	AM7	B	818	827	Right-handed alpha
Helix 116	AM8	B	833	841	Right-handed alpha
Helix 117	AM9	B	846	856	Right-handed alpha
Helix 118	AN1	B	861	871	Right-handed alpha
Helix 119	AN2	B	878	903	Right-handed alpha
Helix 120	AN3	B	911	922	Right-handed alpha
Helix 121	AN4	B	928	934	Right-handed 310
Helix 122	AN5	B	937	945	Right-handed alpha
Helix 123	AN6	B	957	962	Right-handed 310
Helix 124	AN7	B	963	973	Right-handed alpha
Helix 125	AN8	B	976	990	Right-handed alpha
Helix 126	AN9	B	993	1003	Right-handed alpha
Helix 127	AO1	C	71	78	Right-handed alpha
Helix 128	AO2	D	70	78	Right-handed alpha
Helix 129	AO3	E	23	39	Right-handed alpha
Helix 130	AO4	E	47	54	Right-handed alpha
Helix 131	AO5	E	58	72	Right-handed alpha
Helix 132	AO6	E	80	96	Right-handed alpha
Helix 133	AO7	E	96	109	Right-handed alpha
Helix 134	AO8	E	115	124	Right-handed alpha
Helix 135	AO9	E	136	146	Right-handed alpha
Helix 136	AP1	E	154	160	Right-handed alpha
Helix 137	AP2	E	179	183	Right-handed 310
Helix 138	AP3	E	186	197	Right-handed alpha
Helix 139	AP4	E	197	211	Right-handed alpha
Helix 140	AP5	E	222	237	Right-handed alpha
Helix 141	AP6	E	254	264	Right-handed alpha
Helix 142	AP7	E	281	295	Right-handed alpha
Helix 143	AP8	F	27	39	Right-handed alpha
Helix 144	AP9	F	48	53	Right-handed alpha
Helix 145	AQ1	F	58	72	Right-handed alpha
Helix 146	AQ2	F	80	96	Right-handed alpha
Helix 147	AQ3	F	96	109	Right-handed alpha
Helix 148	AQ4	F	115	124	Right-handed alpha
Helix 149	AQ5	F	136	146	Right-handed alpha
Helix 150	AQ6	F	154	160	Right-handed alpha
Helix 151	AQ7	F	173	177	Right-handed 310
Helix 152	AQ8	F	179	183	Right-handed 310
Helix 153	AQ9	F	186	192	Right-handed alpha
Helix 154	AR1	F	192	197	Right-handed alpha
Helix 155	AR2	F	197	211	Right-handed alpha
Helix 156	AR3	F	222	237	Right-handed alpha
Helix 157	AR4	F	238	240	Right-handed 310
Helix 158	AR5	F	254	264	Right-handed alpha
Helix 159	AR6	F	272	274	Right-handed 310
Helix 160	AR7	F	281	296	Right-handed alpha

There are 12 sheets in PDB entry 8YGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	346	348	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	907	first strand
Strand 2	D	232	236	anti-parallel
Strand 3	D	186	195	anti-parallel
Strand 4	D	172	181	anti-parallel
Strand 5	D	11	14	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	247	first strand
Strand 2	B	268	270	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	346	348	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	575	first strand
Strand 2	D	31	35	anti-parallel
Strand 3	D	58	63	anti-parallel
Strand 4	D	218	221	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	11	15	anti-parallel
Strand 3	C	172	180	anti-parallel
Strand 4	C	187	195	anti-parallel
Strand 5	C	233	236	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	58	63	anti-parallel
Strand 3	C	218	222	anti-parallel
Strand 4	C	198	200	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	152	first strand
Strand 2	E	166	169	parallel
Strand 3	E	128	131	parallel
Strand 4	E	42	46	parallel
Strand 5	E	212	216	parallel
Strand 6	E	244	247	parallel
Strand 7	E	267	270	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	152	first strand
Strand 2	F	166	169	parallel
Strand 3	F	128	131	parallel
Strand 4	F	43	46	parallel
Strand 5	F	213	216	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	247	first strand
Strand 2	F	267	270	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YGC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGC