Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YGE entry

There are 5 chains in PDB entry 8YGE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 416	HIS 1194
B	ASP 416	HIS 1194
C	G 6	G 25
D	C 6	T 13
E	A 14	C 25

There are 73 helices in PDB entry 8YGE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	439	451	Right-handed alpha
Helix 2	AA2	A	476	479	Right-handed 310
Helix 3	AA3	A	496	501	Right-handed alpha
Helix 4	AA4	A	502	513	Right-handed alpha
Helix 5	AA5	A	522	527	Right-handed alpha
Helix 6	AA6	A	541	560	Right-handed alpha
Helix 7	AA7	A	560	566	Right-handed alpha
Helix 8	AA8	A	592	603	Right-handed alpha
Helix 9	AA9	A	621	631	Right-handed alpha
Helix 10	AB1	A	632	634	Right-handed 310
Helix 11	AB2	A	644	654	Right-handed alpha
Helix 12	AB3	A	656	664	Right-handed alpha
Helix 13	AB4	A	672	683	Right-handed alpha
Helix 14	AB5	A	687	707	Right-handed alpha
Helix 15	AB6	A	715	729	Right-handed alpha
Helix 16	AB7	A	738	749	Right-handed alpha
Helix 17	AB8	A	754	767	Right-handed alpha
Helix 18	AB9	A	788	793	Right-handed 310
Helix 19	AC1	A	806	814	Right-handed alpha
Helix 20	AC2	A	816	822	Right-handed 310
Helix 21	AC3	A	842	846	Right-handed 310
Helix 22	AC4	A	864	877	Right-handed alpha
Helix 23	AC5	A	882	887	Right-handed alpha
Helix 24	AC6	A	942	953	Right-handed alpha
Helix 25	AC7	A	953	958	Right-handed alpha
Helix 26	AC8	A	982	990	Right-handed alpha
Helix 27	AC9	A	997	1004	Right-handed alpha
Helix 28	AD1	A	1027	1075	Right-handed alpha
Helix 29	AD2	A	1081	1093	Right-handed alpha
Helix 30	AD3	A	1098	1104	Right-handed alpha
Helix 31	AD4	A	1109	1118	Right-handed alpha
Helix 32	AD5	A	1122	1127	Right-handed alpha
Helix 33	AD6	A	1129	1133	Right-handed 310
Helix 34	AD7	A	1134	1160	Right-handed alpha
Helix 35	AD8	A	1166	1187	Right-handed alpha
Helix 36	AD9	B	428	431	Right-handed 310
Helix 37	AE1	B	440	451	Right-handed alpha
Helix 38	AE2	B	476	481	Right-handed alpha
Helix 39	AE3	B	496	501	Right-handed alpha
Helix 40	AE4	B	502	513	Right-handed alpha
Helix 41	AE5	B	522	527	Right-handed alpha
Helix 42	AE6	B	541	547	Right-handed alpha
Helix 43	AE7	B	547	560	Right-handed alpha
Helix 44	AE8	B	560	566	Right-handed alpha
Helix 45	AE9	B	592	603	Right-handed alpha
Helix 46	AF1	B	621	631	Right-handed alpha
Helix 47	AF2	B	632	634	Right-handed 310
Helix 48	AF3	B	644	654	Right-handed alpha
Helix 49	AF4	B	656	664	Right-handed alpha
Helix 50	AF5	B	672	683	Right-handed alpha
Helix 51	AF6	B	687	707	Right-handed alpha
Helix 52	AF7	B	715	730	Right-handed alpha
Helix 53	AF8	B	738	749	Right-handed alpha
Helix 54	AF9	B	754	767	Right-handed alpha
Helix 55	AG1	B	788	793	Right-handed 310
Helix 56	AG2	B	806	814	Right-handed alpha
Helix 57	AG3	B	815	822	Right-handed 310
Helix 58	AG4	B	864	878	Right-handed alpha
Helix 59	AG5	B	882	887	Right-handed alpha
Helix 60	AG6	B	942	953	Right-handed alpha
Helix 61	AG7	B	953	958	Right-handed alpha
Helix 62	AG8	B	982	990	Right-handed alpha
Helix 63	AG9	B	997	1004	Right-handed alpha
Helix 64	AH1	B	1027	1070	Right-handed alpha
Helix 65	AH2	B	1070	1075	Right-handed alpha
Helix 66	AH3	B	1076	1079	Right-handed 310
Helix 67	AH4	B	1081	1092	Right-handed alpha
Helix 68	AH5	B	1098	1103	Right-handed alpha
Helix 69	AH6	B	1109	1119	Right-handed alpha
Helix 70	AH7	B	1122	1127	Right-handed alpha
Helix 71	AH8	B	1129	1133	Right-handed 310
Helix 72	AH9	B	1134	1160	Right-handed alpha
Helix 73	AI1	B	1166	1187	Right-handed alpha

There are 18 sheets in PDB entry 8YGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	469	first strand
Strand 2	A	433	437	parallel
Strand 3	A	533	537	parallel
Strand 4	A	569	572	parallel
Strand 5	A	636	640	anti-parallel
Strand 6	A	684	686	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	485	first strand
Strand 2	A	491	495	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	577	581	anti-parallel
Strand 3	A	609	613	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	802	805	anti-parallel
Strand 3	A	779	782	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	827	first strand
Strand 2	A	830	834	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	853	first strand
Strand 2	A	856	860	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	913	first strand
Strand 2	A	916	920	anti-parallel
Strand 3	A	1006	1008	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	923	926	first strand
Strand 2	A	931	934	anti-parallel
Strand 3	A	974	978	anti-parallel
Strand 4	A	960	964	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1016	first strand
Strand 2	A	1022	1024	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	469	first strand
Strand 2	B	433	437	parallel
Strand 3	B	533	537	parallel
Strand 4	B	569	572	parallel
Strand 5	B	636	640	anti-parallel
Strand 6	B	684	686	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	485	first strand
Strand 2	B	491	494	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	590	first strand
Strand 2	B	577	581	anti-parallel
Strand 3	B	609	613	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	802	805	anti-parallel
Strand 3	B	779	782	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	824	827	first strand
Strand 2	B	830	834	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	849	852	first strand
Strand 2	B	857	860	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	909	913	first strand
Strand 2	B	916	920	anti-parallel
Strand 3	B	1006	1008	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	922	926	first strand
Strand 2	B	931	936	anti-parallel
Strand 3	B	974	978	anti-parallel
Strand 4	B	960	965	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1014	1016	first strand
Strand 2	B	1022	1024	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YGE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGE