Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YGF entry

There are 8 chains in PDB entry 8YGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	ILE 1005
B	ASP 23	ILE 1005
C	MET 1	ASP 240
D	MET 1	ASP 240
E	ASP 23	ILE 1005
F	ASP 23	ILE 1005
G	MET 1	ASP 240
H	MET 1	ASP 240

There are242 helices in PDB entry 8YGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	39	Right-handed alpha
Helix 2	AA2	A	47	53	Right-handed alpha
Helix 3	AA3	A	58	72	Right-handed alpha
Helix 4	AA4	A	80	95	Right-handed alpha
Helix 5	AA5	A	96	109	Right-handed alpha
Helix 6	AA6	A	115	124	Right-handed alpha
Helix 7	AA7	A	136	146	Right-handed alpha
Helix 8	AA8	A	154	159	Right-handed alpha
Helix 9	AA9	A	179	183	Right-handed 310
Helix 10	AB1	A	186	192	Right-handed alpha
Helix 11	AB2	A	192	197	Right-handed alpha
Helix 12	AB3	A	197	211	Right-handed alpha
Helix 13	AB4	A	222	237	Right-handed alpha
Helix 14	AB5	A	254	265	Right-handed alpha
Helix 15	AB6	A	271	275	Right-handed alpha
Helix 16	AB7	A	281	296	Right-handed alpha
Helix 17	AB8	A	298	302	Right-handed 310
Helix 18	AB9	A	307	317	Right-handed alpha
Helix 19	AC1	A	318	322	Right-handed 310
Helix 20	AC2	A	329	334	Right-handed alpha
Helix 21	AC3	A	357	366	Right-handed alpha
Helix 22	AC4	A	368	372	Right-handed 310
Helix 23	AC5	A	374	392	Right-handed alpha
Helix 24	AC6	A	411	416	Right-handed alpha
Helix 25	AC7	A	417	426	Right-handed alpha
Helix 26	AC8	A	431	445	Right-handed alpha
Helix 27	AC9	A	449	462	Right-handed alpha
Helix 28	AD1	A	467	495	Right-handed alpha
Helix 29	AD2	A	495	501	Right-handed alpha
Helix 30	AD3	A	508	520	Right-handed alpha
Helix 31	AD4	A	532	539	Right-handed alpha
Helix 32	AD5	A	540	546	Right-handed 310
Helix 33	AD6	A	548	572	Right-handed alpha
Helix 34	AD7	A	579	598	Right-handed alpha
Helix 35	AD8	A	600	604	Right-handed 310
Helix 36	AD9	A	605	629	Right-handed alpha
Helix 37	AE1	A	634	639	Right-handed alpha
Helix 38	AE2	A	648	658	Right-handed alpha
Helix 39	AE3	A	660	671	Right-handed alpha
Helix 40	AE4	A	672	676	Right-handed 310
Helix 41	AE5	A	680	701	Right-handed alpha
Helix 42	AE6	A	705	711	Right-handed alpha
Helix 43	AE7	A	712	723	Right-handed alpha
Helix 44	AE8	A	724	726	Right-handed 310
Helix 45	AE9	A	729	743	Right-handed alpha
Helix 46	AF1	A	750	765	Right-handed alpha
Helix 47	AF2	A	768	786	Right-handed alpha
Helix 48	AF3	A	799	812	Right-handed alpha
Helix 49	AF4	A	817	826	Right-handed alpha
Helix 50	AF5	A	831	840	Right-handed alpha
Helix 51	AF6	A	841	845	Right-handed 310
Helix 52	AF7	A	846	855	Right-handed alpha
Helix 53	AF8	A	861	871	Right-handed alpha
Helix 54	AF9	A	878	903	Right-handed alpha
Helix 55	AG1	A	912	922	Right-handed alpha
Helix 56	AG2	A	928	934	Right-handed 310
Helix 57	AG3	A	937	945	Right-handed alpha
Helix 58	AG4	A	950	954	Right-handed 310
Helix 59	AG5	A	955	962	Right-handed 310
Helix 60	AG6	A	963	971	Right-handed alpha
Helix 61	AG7	A	979	990	Right-handed alpha
Helix 62	AG8	A	993	1003	Right-handed alpha
Helix 63	AG9	B	24	39	Right-handed alpha
Helix 64	AH1	B	47	53	Right-handed alpha
Helix 65	AH2	B	58	71	Right-handed alpha
Helix 66	AH3	B	80	96	Right-handed alpha
Helix 67	AH4	B	97	109	Right-handed alpha
Helix 68	AH5	B	115	124	Right-handed alpha
Helix 69	AH6	B	136	146	Right-handed alpha
Helix 70	AH7	B	154	161	Right-handed 310
Helix 71	AH8	B	186	197	Right-handed alpha
Helix 72	AH9	B	197	211	Right-handed alpha
Helix 73	AI1	B	222	233	Right-handed alpha
Helix 74	AI2	B	254	265	Right-handed alpha
Helix 75	AI3	B	281	295	Right-handed alpha
Helix 76	AI4	B	298	302	Right-handed 310
Helix 77	AI5	B	304	317	Right-handed alpha
Helix 78	AI6	B	318	322	Right-handed 310
Helix 79	AI7	B	329	334	Right-handed alpha
Helix 80	AI8	B	355	364	Right-handed alpha
Helix 81	AI9	B	366	371	Right-handed alpha
Helix 82	AJ1	B	374	392	Right-handed alpha
Helix 83	AJ2	B	412	416	Right-handed 310
Helix 84	AJ3	B	417	427	Right-handed alpha
Helix 85	AJ4	B	431	445	Right-handed alpha
Helix 86	AJ5	B	447	462	Right-handed alpha
Helix 87	AJ6	B	463	466	Right-handed 310
Helix 88	AJ7	B	467	495	Right-handed alpha
Helix 89	AJ8	B	495	501	Right-handed alpha
Helix 90	AJ9	B	508	519	Right-handed alpha
Helix 91	AK1	B	526	531	Right-handed alpha
Helix 92	AK2	B	534	539	Right-handed alpha
Helix 93	AK3	B	540	544	Right-handed 310
Helix 94	AK4	B	548	570	Right-handed alpha
Helix 95	AK5	B	581	598	Right-handed alpha
Helix 96	AK6	B	605	628	Right-handed alpha
Helix 97	AK7	B	648	658	Right-handed alpha
Helix 98	AK8	B	660	671	Right-handed alpha
Helix 99	AK9	B	672	676	Right-handed 310
Helix 100	AL1	B	680	701	Right-handed alpha
Helix 101	AL2	B	705	723	Right-handed alpha
Helix 102	AL3	B	729	743	Right-handed alpha
Helix 103	AL4	B	750	762	Right-handed alpha
Helix 104	AL5	B	768	784	Right-handed alpha
Helix 105	AL6	B	800	812	Right-handed alpha
Helix 106	AL7	B	818	827	Right-handed alpha
Helix 107	AL8	B	834	841	Right-handed alpha
Helix 108	AL9	B	846	856	Right-handed alpha
Helix 109	AM1	B	861	871	Right-handed alpha
Helix 110	AM2	B	878	903	Right-handed alpha
Helix 111	AM3	B	911	922	Right-handed alpha
Helix 112	AM4	B	928	934	Right-handed 310
Helix 113	AM5	B	937	945	Right-handed alpha
Helix 114	AM6	B	950	954	Right-handed 310
Helix 115	AM7	B	955	961	Right-handed 310
Helix 116	AM8	B	962	972	Right-handed alpha
Helix 117	AM9	B	976	991	Right-handed alpha
Helix 118	AN1	B	993	1005	Right-handed alpha
Helix 119	AN2	C	71	78	Right-handed alpha
Helix 120	AN3	D	39	43	Right-handed 310
Helix 121	AN4	D	70	77	Right-handed alpha
Helix 122	AN5	E	24	39	Right-handed alpha
Helix 123	AN6	E	47	53	Right-handed alpha
Helix 124	AN7	E	58	72	Right-handed alpha
Helix 125	AN8	E	85	95	Right-handed alpha
Helix 126	AN9	E	96	108	Right-handed alpha
Helix 127	AO1	E	115	122	Right-handed alpha
Helix 128	AO2	E	123	125	Right-handed 310
Helix 129	AO3	E	136	146	Right-handed alpha
Helix 130	AO4	E	154	159	Right-handed alpha
Helix 131	AO5	E	179	183	Right-handed 310
Helix 132	AO6	E	186	192	Right-handed alpha
Helix 133	AO7	E	192	197	Right-handed alpha
Helix 134	AO8	E	197	211	Right-handed alpha
Helix 135	AO9	E	222	237	Right-handed alpha
Helix 136	AP1	E	254	265	Right-handed alpha
Helix 137	AP2	E	271	275	Right-handed alpha
Helix 138	AP3	E	281	295	Right-handed alpha
Helix 139	AP4	E	297	302	Right-handed 310
Helix 140	AP5	E	306	317	Right-handed alpha
Helix 141	AP6	E	318	321	Right-handed 310
Helix 142	AP7	E	328	333	Right-handed 310
Helix 143	AP8	E	355	366	Right-handed alpha
Helix 144	AP9	E	367	373	Right-handed 310
Helix 145	AQ1	E	374	391	Right-handed alpha
Helix 146	AQ2	E	396	400	Right-handed 310
Helix 147	AQ3	E	411	416	Right-handed alpha
Helix 148	AQ4	E	417	426	Right-handed alpha
Helix 149	AQ5	E	431	445	Right-handed alpha
Helix 150	AQ6	E	447	461	Right-handed alpha
Helix 151	AQ7	E	467	500	Right-handed alpha
Helix 152	AQ8	E	508	520	Right-handed alpha
Helix 153	AQ9	E	532	539	Right-handed alpha
Helix 154	AR1	E	540	543	Right-handed 310
Helix 155	AR2	E	548	572	Right-handed alpha
Helix 156	AR3	E	579	598	Right-handed alpha
Helix 157	AR4	E	600	604	Right-handed 310
Helix 158	AR5	E	605	628	Right-handed alpha
Helix 159	AR6	E	634	639	Right-handed alpha
Helix 160	AR7	E	649	659	Right-handed alpha
Helix 161	AR8	E	660	669	Right-handed alpha
Helix 162	AR9	E	680	701	Right-handed alpha
Helix 163	AS1	E	705	711	Right-handed alpha
Helix 164	AS2	E	712	723	Right-handed alpha
Helix 165	AS3	E	724	726	Right-handed 310
Helix 166	AS4	E	729	743	Right-handed alpha
Helix 167	AS5	E	750	765	Right-handed alpha
Helix 168	AS6	E	768	786	Right-handed alpha
Helix 169	AS7	E	799	812	Right-handed alpha
Helix 170	AS8	E	817	826	Right-handed alpha
Helix 171	AS9	E	831	840	Right-handed alpha
Helix 172	AT1	E	841	845	Right-handed 310
Helix 173	AT2	E	846	855	Right-handed alpha
Helix 174	AT3	E	861	869	Right-handed alpha
Helix 175	AT4	E	878	903	Right-handed alpha
Helix 176	AT5	E	912	922	Right-handed alpha
Helix 177	AT6	E	927	934	Right-handed 310
Helix 178	AT7	E	937	945	Right-handed alpha
Helix 179	AT8	E	950	954	Right-handed 310
Helix 180	AT9	E	958	962	Right-handed 310
Helix 181	AU1	E	963	971	Right-handed alpha
Helix 182	AU2	E	977	991	Right-handed alpha
Helix 183	AU3	E	993	1003	Right-handed alpha
Helix 184	AU4	F	24	39	Right-handed alpha
Helix 185	AU5	F	47	54	Right-handed alpha
Helix 186	AU6	F	58	71	Right-handed alpha
Helix 187	AU7	F	80	109	Right-handed alpha
Helix 188	AU8	F	115	124	Right-handed alpha
Helix 189	AU9	F	136	146	Right-handed alpha
Helix 190	AV1	F	179	183	Right-handed 310
Helix 191	AV2	F	186	197	Right-handed alpha
Helix 192	AV3	F	197	211	Right-handed alpha
Helix 193	AV4	F	222	234	Right-handed alpha
Helix 194	AV5	F	254	265	Right-handed alpha
Helix 195	AV6	F	281	295	Right-handed alpha
Helix 196	AV7	F	298	302	Right-handed 310
Helix 197	AV8	F	304	317	Right-handed alpha
Helix 198	AV9	F	318	322	Right-handed 310
Helix 199	AW1	F	329	334	Right-handed alpha
Helix 200	AW2	F	355	365	Right-handed alpha
Helix 201	AW3	F	366	372	Right-handed alpha
Helix 202	AW4	F	374	392	Right-handed alpha
Helix 203	AW5	F	396	400	Right-handed 310
Helix 204	AW6	F	411	416	Right-handed alpha
Helix 205	AW7	F	417	427	Right-handed alpha
Helix 206	AW8	F	431	446	Right-handed alpha
Helix 207	AW9	F	447	462	Right-handed alpha
Helix 208	AX1	F	463	465	Right-handed 310
Helix 209	AX2	F	467	495	Right-handed alpha
Helix 210	AX3	F	495	501	Right-handed alpha
Helix 211	AX4	F	508	519	Right-handed alpha
Helix 212	AX5	F	524	531	Right-handed alpha
Helix 213	AX6	F	532	537	Right-handed alpha
Helix 214	AX7	F	540	547	Right-handed 310
Helix 215	AX8	F	548	570	Right-handed alpha
Helix 216	AX9	F	581	598	Right-handed alpha
Helix 217	AY1	F	601	604	Right-handed 310
Helix 218	AY2	F	605	628	Right-handed alpha
Helix 219	AY3	F	648	658	Right-handed alpha
Helix 220	AY4	F	660	671	Right-handed alpha
Helix 221	AY5	F	672	676	Right-handed 310
Helix 222	AY6	F	682	699	Right-handed alpha
Helix 223	AY7	F	705	723	Right-handed alpha
Helix 224	AY8	F	724	726	Right-handed 310
Helix 225	AY9	F	729	743	Right-handed alpha
Helix 226	AZ1	F	750	763	Right-handed alpha
Helix 227	AZ2	F	768	787	Right-handed alpha
Helix 228	AZ3	F	800	812	Right-handed alpha
Helix 229	AZ4	F	819	826	Right-handed alpha
Helix 230	AZ5	F	832	841	Right-handed alpha
Helix 231	AZ6	F	846	856	Right-handed alpha
Helix 232	AZ7	F	863	869	Right-handed alpha
Helix 233	AZ8	F	881	903	Right-handed alpha
Helix 234	AZ9	F	911	922	Right-handed alpha
Helix 235	BA1	F	928	934	Right-handed 310
Helix 236	BA2	F	937	945	Right-handed alpha
Helix 237	BA3	F	956	962	Right-handed alpha
Helix 238	BA4	F	964	972	Right-handed alpha
Helix 239	BA5	F	976	991	Right-handed alpha
Helix 240	BA6	F	993	1003	Right-handed alpha
Helix 241	BA7	G	72	78	Right-handed alpha
Helix 242	BA8	H	70	78	Right-handed alpha

There are 19 sheets in PDB entry 8YGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	129	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	268	270	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	346	348	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	575	first strand
Strand 2	C	31	35	anti-parallel
Strand 3	C	58	64	anti-parallel
Strand 4	C	217	222	anti-parallel
Strand 5	C	198	199	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	794	795	first strand
Strand 2	D	218	225	anti-parallel
Strand 3	D	58	63	anti-parallel
Strand 4	D	31	35	anti-parallel
Strand 5	B	574	575	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	794	795	first strand
Strand 2	D	218	225	anti-parallel
Strand 3	D	197	200	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	906	first strand
Strand 2	D	233	236	anti-parallel
Strand 3	D	187	195	anti-parallel
Strand 4	D	172	180	anti-parallel
Strand 5	D	10	14	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	267	270	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	395	396	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	24	first strand
Strand 2	C	10	13	anti-parallel
Strand 3	C	173	180	anti-parallel
Strand 4	C	187	195	anti-parallel
Strand 5	C	233	236	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	152	first strand
Strand 2	E	166	169	parallel
Strand 3	E	128	131	parallel
Strand 4	E	42	46	parallel
Strand 5	E	212	215	parallel
Strand 6	E	244	247	parallel
Strand 7	E	267	270	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	340	first strand
Strand 2	E	346	348	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	574	575	first strand
Strand 2	G	31	35	anti-parallel
Strand 3	G	58	60	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	904	906	first strand
Strand 2	H	233	236	anti-parallel
Strand 3	H	187	195	anti-parallel
Strand 4	H	172	180	anti-parallel
Strand 5	H	9	14	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	152	first strand
Strand 2	F	166	169	parallel
Strand 3	F	128	131	parallel
Strand 4	F	42	46	parallel
Strand 5	F	212	216	parallel
Strand 6	F	244	247	parallel
Strand 7	F	267	270	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	340	first strand
Strand 2	F	346	348	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	573	575	first strand
Strand 2	H	31	35	anti-parallel
Strand 3	H	58	63	anti-parallel
Strand 4	H	218	222	anti-parallel
Strand 5	H	198	200	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	24	first strand
Strand 2	G	10	14	anti-parallel
Strand 3	G	172	180	anti-parallel
Strand 4	G	187	194	anti-parallel
Strand 5	G	233	236	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	63	first strand
Strand 2	G	218	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGF