Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YGK entry

There are 4 chains in PDB entry 8YGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 1ASP 240
C
 MET 1ASP 240
A
 GLU 298ILE 1005
B
 GLU 298ILE 1005
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 93 helices in PDB entry 8YGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
39 43Right-handed 310
Helix 2
AA2
D
70 78Right-handed alpha
Helix 3
AA3
C
71 78Right-handed alpha
Helix 4
AA4
A
298 302Right-handed 310
Helix 5
AA5
A
306 317Right-handed alpha
Helix 6
AA6
A
318 322Right-handed 310
Helix 7
AA7
A
326 328Right-handed 310
Helix 8
AA8
A
329 334Right-handed alpha
Helix 9
AA9
A
357 366Right-handed alpha
Helix 10
AB1
A
367 372Right-handed alpha
Helix 11
AB2
A
374 392Right-handed alpha
Helix 12
AB3
A
396 400Right-handed 310
Helix 13
AB4
A
411 416Right-handed alpha
Helix 14
AB5
A
417 426Right-handed alpha
Helix 15
AB6
A
431 445Right-handed alpha
Helix 16
AB7
A
449 462Right-handed alpha
Helix 17
AB8
A
467 495Right-handed alpha
Helix 18
AB9
A
495 500Right-handed alpha
Helix 19
AC1
A
508 519Right-handed alpha
Helix 20
AC2
A
520 522Right-handed 310
Helix 21
AC3
A
523 531Right-handed 310
Helix 22
AC4
A
532 539Right-handed alpha
Helix 23
AC5
A
542 547Right-handed alpha
Helix 24
AC6
A
548 571Right-handed alpha
Helix 25
AC7
A
579 599Right-handed alpha
Helix 26
AC8
A
600 604Right-handed 310
Helix 27
AC9
A
605 628Right-handed alpha
Helix 28
AD1
A
634 639Right-handed alpha
Helix 29
AD2
A
651 659Right-handed alpha
Helix 30
AD3
A
660 671Right-handed alpha
Helix 31
AD4
A
680 701Right-handed alpha
Helix 32
AD5
A
705 722Right-handed alpha
Helix 33
AD6
A
729 742Right-handed alpha
Helix 34
AD7
A
750 761Right-handed alpha
Helix 35
AD8
A
768 786Right-handed alpha
Helix 36
AD9
A
801 810Right-handed alpha
Helix 37
AE1
A
817 827Right-handed alpha
Helix 38
AE2
A
831 840Right-handed alpha
Helix 39
AE3
A
841 845Right-handed 310
Helix 40
AE4
A
846 855Right-handed alpha
Helix 41
AE5
A
861 871Right-handed alpha
Helix 42
AE6
A
878 903Right-handed alpha
Helix 43
AE7
A
912 922Right-handed alpha
Helix 44
AE8
A
927 934Right-handed 310
Helix 45
AE9
A
937 944Right-handed alpha
Helix 46
AF1
A
950 954Right-handed 310
Helix 47
AF2
A
957 961Right-handed 310
Helix 48
AF3
A
963 970Right-handed alpha
Helix 49
AF4
A
973 977Right-handed 310
Helix 50
AF5
A
979 991Right-handed alpha
Helix 51
AF6
A
993 1003Right-handed alpha
Helix 52
AF7
B
304 317Right-handed alpha
Helix 53
AF8
B
318 322Right-handed 310
Helix 54
AF9
B
329 334Right-handed alpha
Helix 55
AG1
B
355 366Right-handed alpha
Helix 56
AG2
B
366 371Right-handed alpha
Helix 57
AG3
B
374 391Right-handed alpha
Helix 58
AG4
B
417 427Right-handed alpha
Helix 59
AG5
B
431 445Right-handed alpha
Helix 60
AG6
B
447 463Right-handed alpha
Helix 61
AG7
B
464 466Right-handed 310
Helix 62
AG8
B
468 495Right-handed alpha
Helix 63
AG9
B
495 501Right-handed alpha
Helix 64
AH1
B
508 520Right-handed alpha
Helix 65
AH2
B
526 531Right-handed alpha
Helix 66
AH3
B
532 539Right-handed alpha
Helix 67
AH4
B
540 546Right-handed 310
Helix 68
AH5
B
547 550Right-handed 310
Helix 69
AH6
B
551 569Right-handed alpha
Helix 70
AH7
B
579 598Right-handed alpha
Helix 71
AH8
B
605 626Right-handed alpha
Helix 72
AH9
B
648 659Right-handed alpha
Helix 73
AI1
B
660 671Right-handed alpha
Helix 74
AI2
B
672 676Right-handed 310
Helix 75
AI3
B
682 701Right-handed alpha
Helix 76
AI4
B
705 722Right-handed alpha
Helix 77
AI5
B
729 742Right-handed alpha
Helix 78
AI6
B
752 759Right-handed alpha
Helix 79
AI7
B
760 763Right-handed 310
Helix 80
AI8
B
768 786Right-handed alpha
Helix 81
AI9
B
800 812Right-handed alpha
Helix 82
AJ1
B
818 827Right-handed alpha
Helix 83
AJ2
B
832 841Right-handed alpha
Helix 84
AJ3
B
846 856Right-handed alpha
Helix 85
AJ4
B
861 871Right-handed alpha
Helix 86
AJ5
B
878 902Right-handed alpha
Helix 87
AJ6
B
912 922Right-handed alpha
Helix 88
AJ7
B
927 934Right-handed 310
Helix 89
AJ8
B
937 945Right-handed alpha
Helix 90
AJ9
B
950 954Right-handed 310
Helix 91
AK1
B
963 973Right-handed alpha
Helix 92
AK2
B
976 991Right-handed alpha
Helix 93
AK3
B
993 1003Right-handed alpha
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There are 5 sheets in PDB entry 8YGK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
172 180anti-parallel
Strand 3
D
187 195anti-parallel
Strand 4
D
232 236anti-parallel
Strand 5
A
904 907anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 35first strand
Strand 2
D
58 63anti-parallel
Strand 3
D
218 221anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 24first strand
Strand 2
C
10 15anti-parallel
Strand 3
C
172 180anti-parallel
Strand 4
C
187 194anti-parallel
Strand 5
C
233 236anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
346 348anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 340first strand
Strand 2
B
346 348anti-parallel
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