Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YGL entry

There are 34 chains in PDB entry 8YGL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ASP 6	LEU 49
1	PHE 4	GLY 52
2	THR 10	TRP 48
3	SER 2	ARG 53
7	MET 1	ASP 45
8	LEU 7	LEU 49
9	MET 1	ARG 53
A	MET 1	ARG 53
B	LEU 7	LEU 49
C	LEU 12	LEU 54
D	MET 1	ARG 53
E	LEU 7	LEU 49
F	MET 1	ARG 53
G	LEU 7	LEU 49
H	MET 1	ARG 254
I	MET 1	ARG 53
J	LEU 7	LEU 49
K	SER 2	ARG 53
L	ALA 2	GLY 282
M	GLU 3	VAL 306
N	LEU 7	LEU 49
O	SER 2	ARG 53
P	LEU 7	LEU 49
Q	SER 2	ARG 53
R	LEU 7	LEU 49
S	SER 2	ARG 53
T	LEU 7	LEU 49
U	SER 2	ARG 53
V	LEU 7	LEU 49
W	SER 2	ARG 53
X	ILE 14	GLY 64
Z	SER 8	LEU 49
a	PHE 4	GLY 52
b	LEU 12	TRP 48

There are103 helices in PDB entry 8YGL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	13	46	Right-handed alpha
Helix 2	AA2	1	6	11	Right-handed alpha
Helix 3	AA3	1	12	38	Right-handed alpha
Helix 4	AA4	1	42	52	Right-handed alpha
Helix 5	AA5	2	13	46	Right-handed alpha
Helix 6	AA6	3	3	5	Right-handed 310
Helix 7	AA7	3	6	11	Right-handed alpha
Helix 8	AA8	3	12	38	Right-handed alpha
Helix 9	AA9	3	42	51	Right-handed alpha
Helix 10	AB1	7	3	10	Right-handed 310
Helix 11	AB2	7	12	37	Right-handed alpha
Helix 12	AB3	8	13	46	Right-handed alpha
Helix 13	AB4	9	3	9	Right-handed 310
Helix 14	AB5	9	12	37	Right-handed alpha
Helix 15	AB6	9	42	51	Right-handed alpha
Helix 16	AB7	A	3	9	Right-handed 310
Helix 17	AB8	A	12	38	Right-handed alpha
Helix 18	AB9	A	42	51	Right-handed alpha
Helix 19	AC1	B	13	46	Right-handed alpha
Helix 20	AC2	C	18	51	Right-handed alpha
Helix 21	AC3	D	3	5	Right-handed 310
Helix 22	AC4	D	6	11	Right-handed alpha
Helix 23	AC5	D	12	38	Right-handed alpha
Helix 24	AC6	D	42	52	Right-handed alpha
Helix 25	AC7	E	13	46	Right-handed alpha
Helix 26	AC8	F	3	10	Right-handed 310
Helix 27	AC9	F	12	38	Right-handed alpha
Helix 28	AD1	F	42	52	Right-handed alpha
Helix 29	AD2	G	13	46	Right-handed alpha
Helix 30	AD3	H	11	35	Right-handed alpha
Helix 31	AD4	H	77	84	Right-handed alpha
Helix 32	AD5	H	107	112	Right-handed alpha
Helix 33	AD6	H	113	117	Right-handed 310
Helix 34	AD7	H	198	200	Right-handed 310
Helix 35	AD8	H	230	248	Right-handed alpha
Helix 36	AD9	I	3	5	Right-handed 310
Helix 37	AE1	I	6	11	Right-handed alpha
Helix 38	AE2	I	12	38	Right-handed alpha
Helix 39	AE3	I	42	52	Right-handed alpha
Helix 40	AE4	J	13	46	Right-handed alpha
Helix 41	AE5	K	3	5	Right-handed 310
Helix 42	AE6	K	6	11	Right-handed alpha
Helix 43	AE7	K	12	37	Right-handed alpha
Helix 44	AE8	K	42	52	Right-handed alpha
Helix 45	AE9	L	7	11	Right-handed 310
Helix 46	AF1	L	33	58	Right-handed alpha
Helix 47	AF2	L	84	113	Right-handed alpha
Helix 48	AF3	L	116	134	Right-handed alpha
Helix 49	AF4	L	134	141	Right-handed alpha
Helix 50	AF5	L	142	146	Right-handed 310
Helix 51	AF6	L	152	164	Right-handed alpha
Helix 52	AF7	L	165	166	Right-handed 310
Helix 53	AF8	L	167	170	Right-handed 310
Helix 54	AF9	L	171	200	Right-handed alpha
Helix 55	AG1	L	209	222	Right-handed alpha
Helix 56	AG2	L	226	251	Right-handed alpha
Helix 57	AG3	L	259	263	Right-handed 310
Helix 58	AG4	L	264	269	Right-handed alpha
Helix 59	AG5	M	37	42	Right-handed alpha
Helix 60	AG6	M	54	79	Right-handed alpha
Helix 61	AG7	M	82	89	Right-handed alpha
Helix 62	AG8	M	99	103	Right-handed 310
Helix 63	AG9	M	109	140	Right-handed alpha
Helix 64	AH1	M	144	162	Right-handed alpha
Helix 65	AH2	M	162	169	Right-handed alpha
Helix 66	AH3	M	170	174	Right-handed 310
Helix 67	AH4	M	178	193	Right-handed alpha
Helix 68	AH5	M	195	198	Right-handed 310
Helix 69	AH6	M	199	226	Right-handed alpha
Helix 70	AH7	M	227	230	Right-handed 310
Helix 71	AH8	M	233	240	Right-handed alpha
Helix 72	AH9	M	242	257	Right-handed alpha
Helix 73	AI1	M	264	290	Right-handed alpha
Helix 74	AI2	M	293	301	Right-handed alpha
Helix 75	AI3	N	13	46	Right-handed alpha
Helix 76	AI4	O	3	10	Right-handed 310
Helix 77	AI5	O	12	37	Right-handed alpha
Helix 78	AI6	O	42	52	Right-handed alpha
Helix 79	AI7	P	13	46	Right-handed alpha
Helix 80	AI8	Q	3	10	Right-handed 310
Helix 81	AI9	Q	12	38	Right-handed alpha
Helix 82	AJ1	Q	42	51	Right-handed alpha
Helix 83	AJ2	R	13	46	Right-handed alpha
Helix 84	AJ3	S	3	5	Right-handed 310
Helix 85	AJ4	S	6	11	Right-handed alpha
Helix 86	AJ5	S	12	38	Right-handed alpha
Helix 87	AJ6	S	42	51	Right-handed alpha
Helix 88	AJ7	T	13	46	Right-handed alpha
Helix 89	AJ8	U	3	10	Right-handed 310
Helix 90	AJ9	U	12	38	Right-handed alpha
Helix 91	AK1	U	42	51	Right-handed alpha
Helix 92	AK2	V	13	46	Right-handed alpha
Helix 93	AK3	W	3	5	Right-handed 310
Helix 94	AK4	W	6	11	Right-handed alpha
Helix 95	AK5	W	12	38	Right-handed alpha
Helix 96	AK6	W	42	52	Right-handed alpha
Helix 97	AK7	X	15	51	Right-handed alpha
Helix 98	AK8	X	52	58	Right-handed 310
Helix 99	AK9	Z	12	46	Right-handed alpha
Helix 100	AL1	a	12	38	Right-handed alpha
Helix 101	AL2	a	42	51	Right-handed alpha
Helix 102	AL3	b	13	15	Right-handed 310
Helix 103	AL4	b	16	46	Right-handed alpha

There are 8 sheets in PDB entry 8YGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	66	first strand
Strand 2	H	71	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	91	93	first strand
Strand 2	H	102	104	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	137	first strand
Strand 2	H	164	174	anti-parallel
Strand 3	H	179	187	anti-parallel
Strand 4	H	192	196	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	137	first strand
Strand 2	H	164	174	anti-parallel
Strand 3	H	156	159	anti-parallel
Strand 4	H	207	209	parallel
Strand 5	H	201	202	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	145	149	first strand
Strand 2	M	11	14	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	27	first strand
Strand 2	L	30	32	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	67	first strand
Strand 2	L	149	150	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	36	first strand
Strand 2	M	47	48	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YGL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGL