Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YGN entry

There are 6 chains in PDB entry 8YGN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	ASP 240
C	MET 1	ASP 240
A	ASP 23	ILE 1005
B	ASP 23	ILE 1005
E	MET 21	GLN 297
F	VAL 26	GLN 297

There are150 helices in PDB entry 8YGN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	70	78	Right-handed alpha
Helix 2	AA2	C	70	76	Right-handed alpha
Helix 3	AA3	A	24	39	Right-handed alpha
Helix 4	AA4	A	47	52	Right-handed alpha
Helix 5	AA5	A	58	72	Right-handed alpha
Helix 6	AA6	A	80	95	Right-handed alpha
Helix 7	AA7	A	96	109	Right-handed alpha
Helix 8	AA8	A	115	124	Right-handed alpha
Helix 9	AA9	A	136	146	Right-handed alpha
Helix 10	AB1	A	156	161	Right-handed alpha
Helix 11	AB2	A	186	197	Right-handed alpha
Helix 12	AB3	A	197	210	Right-handed alpha
Helix 13	AB4	A	222	237	Right-handed alpha
Helix 14	AB5	A	238	240	Right-handed 310
Helix 15	AB6	A	254	265	Right-handed alpha
Helix 16	AB7	A	271	275	Right-handed alpha
Helix 17	AB8	A	281	295	Right-handed alpha
Helix 18	AB9	A	297	302	Right-handed 310
Helix 19	AC1	A	306	317	Right-handed alpha
Helix 20	AC2	A	318	321	Right-handed 310
Helix 21	AC3	A	329	334	Right-handed alpha
Helix 22	AC4	A	355	366	Right-handed alpha
Helix 23	AC5	A	367	372	Right-handed alpha
Helix 24	AC6	A	374	392	Right-handed alpha
Helix 25	AC7	A	398	400	Right-handed 310
Helix 26	AC8	A	417	426	Right-handed alpha
Helix 27	AC9	A	431	445	Right-handed alpha
Helix 28	AD1	A	447	463	Right-handed alpha
Helix 29	AD2	A	468	495	Right-handed alpha
Helix 30	AD3	A	495	501	Right-handed alpha
Helix 31	AD4	A	508	519	Right-handed alpha
Helix 32	AD5	A	520	522	Right-handed 310
Helix 33	AD6	A	523	529	Right-handed 310
Helix 34	AD7	A	534	539	Right-handed alpha
Helix 35	AD8	A	540	544	Right-handed 310
Helix 36	AD9	A	548	572	Right-handed alpha
Helix 37	AE1	A	579	598	Right-handed alpha
Helix 38	AE2	A	600	604	Right-handed 310
Helix 39	AE3	A	605	628	Right-handed alpha
Helix 40	AE4	A	634	639	Right-handed alpha
Helix 41	AE5	A	648	659	Right-handed alpha
Helix 42	AE6	A	660	669	Right-handed alpha
Helix 43	AE7	A	680	701	Right-handed alpha
Helix 44	AE8	A	705	723	Right-handed alpha
Helix 45	AE9	A	724	726	Right-handed 310
Helix 46	AF1	A	729	741	Right-handed alpha
Helix 47	AF2	A	750	761	Right-handed alpha
Helix 48	AF3	A	768	786	Right-handed alpha
Helix 49	AF4	A	801	812	Right-handed alpha
Helix 50	AF5	A	817	827	Right-handed alpha
Helix 51	AF6	A	831	840	Right-handed alpha
Helix 52	AF7	A	841	845	Right-handed 310
Helix 53	AF8	A	846	855	Right-handed alpha
Helix 54	AF9	A	861	870	Right-handed alpha
Helix 55	AG1	A	878	903	Right-handed alpha
Helix 56	AG2	A	912	922	Right-handed alpha
Helix 57	AG3	A	927	934	Right-handed 310
Helix 58	AG4	A	937	945	Right-handed alpha
Helix 59	AG5	A	950	954	Right-handed 310
Helix 60	AG6	A	955	962	Right-handed 310
Helix 61	AG7	A	963	970	Right-handed alpha
Helix 62	AG8	A	979	991	Right-handed alpha
Helix 63	AG9	A	993	1004	Right-handed alpha
Helix 64	AH1	B	24	39	Right-handed alpha
Helix 65	AH2	B	47	53	Right-handed alpha
Helix 66	AH3	B	58	72	Right-handed alpha
Helix 67	AH4	B	80	108	Right-handed alpha
Helix 68	AH5	B	115	122	Right-handed alpha
Helix 69	AH6	B	123	125	Right-handed 310
Helix 70	AH7	B	136	145	Right-handed alpha
Helix 71	AH8	B	157	161	Right-handed 310
Helix 72	AH9	B	186	197	Right-handed alpha
Helix 73	AI1	B	197	211	Right-handed alpha
Helix 74	AI2	B	222	237	Right-handed alpha
Helix 75	AI3	B	238	240	Right-handed 310
Helix 76	AI4	B	254	265	Right-handed alpha
Helix 77	AI5	B	281	295	Right-handed alpha
Helix 78	AI6	B	305	317	Right-handed alpha
Helix 79	AI7	B	318	322	Right-handed 310
Helix 80	AI8	B	326	328	Right-handed 310
Helix 81	AI9	B	329	334	Right-handed alpha
Helix 82	AJ1	B	355	366	Right-handed alpha
Helix 83	AJ2	B	366	371	Right-handed alpha
Helix 84	AJ3	B	374	392	Right-handed alpha
Helix 85	AJ4	B	412	416	Right-handed 310
Helix 86	AJ5	B	419	425	Right-handed alpha
Helix 87	AJ6	B	431	445	Right-handed alpha
Helix 88	AJ7	B	447	463	Right-handed alpha
Helix 89	AJ8	B	464	466	Right-handed 310
Helix 90	AJ9	B	468	495	Right-handed alpha
Helix 91	AK1	B	495	501	Right-handed alpha
Helix 92	AK2	B	508	519	Right-handed alpha
Helix 93	AK3	B	523	528	Right-handed 310
Helix 94	AK4	B	532	539	Right-handed alpha
Helix 95	AK5	B	540	546	Right-handed 310
Helix 96	AK6	B	548	570	Right-handed alpha
Helix 97	AK7	B	579	595	Right-handed alpha
Helix 98	AK8	B	601	604	Right-handed 310
Helix 99	AK9	B	605	628	Right-handed alpha
Helix 100	AL1	B	648	659	Right-handed alpha
Helix 101	AL2	B	660	671	Right-handed alpha
Helix 102	AL3	B	672	676	Right-handed 310
Helix 103	AL4	B	682	701	Right-handed alpha
Helix 104	AL5	B	705	722	Right-handed alpha
Helix 105	AL6	B	723	726	Right-handed 310
Helix 106	AL7	B	729	743	Right-handed alpha
Helix 107	AL8	B	750	759	Right-handed alpha
Helix 108	AL9	B	768	784	Right-handed alpha
Helix 109	AM1	B	800	812	Right-handed alpha
Helix 110	AM2	B	818	827	Right-handed alpha
Helix 111	AM3	B	834	842	Right-handed alpha
Helix 112	AM4	B	846	856	Right-handed alpha
Helix 113	AM5	B	861	871	Right-handed alpha
Helix 114	AM6	B	878	902	Right-handed alpha
Helix 115	AM7	B	911	922	Right-handed alpha
Helix 116	AM8	B	927	934	Right-handed 310
Helix 117	AM9	B	937	945	Right-handed alpha
Helix 118	AN1	B	946	949	Right-handed 310
Helix 119	AN2	B	957	962	Right-handed 310
Helix 120	AN3	B	963	973	Right-handed alpha
Helix 121	AN4	B	976	990	Right-handed alpha
Helix 122	AN5	B	993	1003	Right-handed alpha
Helix 123	AN6	E	23	39	Right-handed alpha
Helix 124	AN7	E	47	54	Right-handed alpha
Helix 125	AN8	E	58	72	Right-handed alpha
Helix 126	AN9	E	80	109	Right-handed alpha
Helix 127	AO1	E	115	124	Right-handed alpha
Helix 128	AO2	E	136	146	Right-handed alpha
Helix 129	AO3	E	154	160	Right-handed alpha
Helix 130	AO4	E	186	192	Right-handed alpha
Helix 131	AO5	E	192	197	Right-handed alpha
Helix 132	AO6	E	197	211	Right-handed alpha
Helix 133	AO7	E	222	237	Right-handed alpha
Helix 134	AO8	E	254	264	Right-handed alpha
Helix 135	AO9	E	281	296	Right-handed alpha
Helix 136	AP1	F	27	39	Right-handed alpha
Helix 137	AP2	F	47	54	Right-handed alpha
Helix 138	AP3	F	58	72	Right-handed alpha
Helix 139	AP4	F	80	109	Right-handed alpha
Helix 140	AP5	F	115	124	Right-handed alpha
Helix 141	AP6	F	136	146	Right-handed alpha
Helix 142	AP7	F	154	160	Right-handed alpha
Helix 143	AP8	F	186	192	Right-handed alpha
Helix 144	AP9	F	192	197	Right-handed alpha
Helix 145	AQ1	F	197	211	Right-handed alpha
Helix 146	AQ2	F	223	237	Right-handed alpha
Helix 147	AQ3	F	238	240	Right-handed 310
Helix 148	AQ4	F	254	264	Right-handed alpha
Helix 149	AQ5	F	272	274	Right-handed 310
Helix 150	AQ6	F	281	296	Right-handed alpha

There are 10 sheets in PDB entry 8YGN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	172	180	anti-parallel
Strand 3	D	187	195	anti-parallel
Strand 4	D	232	236	anti-parallel
Strand 5	A	904	907	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	200	first strand
Strand 2	D	218	221	anti-parallel
Strand 3	D	58	63	anti-parallel
Strand 4	D	31	35	anti-parallel
Strand 5	B	574	575	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	172	180	anti-parallel
Strand 3	C	187	195	anti-parallel
Strand 4	C	233	236	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	58	63	anti-parallel
Strand 3	C	218	222	anti-parallel
Strand 4	C	198	200	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	42	46	parallel
Strand 5	A	212	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	395	396	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	215	parallel
Strand 6	B	244	247	parallel
Strand 7	B	268	270	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	346	348	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	152	first strand
Strand 2	E	166	169	parallel
Strand 3	E	128	131	parallel
Strand 4	E	42	46	parallel
Strand 5	E	212	216	parallel
Strand 6	E	244	247	parallel
Strand 7	E	267	270	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	152	first strand
Strand 2	F	166	169	parallel
Strand 3	F	128	131	parallel
Strand 4	F	42	46	parallel
Strand 5	F	212	216	parallel
Strand 6	F	244	247	parallel
Strand 7	F	267	270	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YGN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGN