Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YGO entry

There are 4 chains in PDB entry 8YGO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 303	ILE 1005
B	ASN 299	ILE 1005
C	LYS 2	ASP 240
D	MET 1	ASP 240

There are 90 helices in PDB entry 8YGO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	304	315	Right-handed alpha
Helix 2	AA2	A	316	321	Right-handed 310
Helix 3	AA3	A	326	328	Right-handed 310
Helix 4	AA4	A	329	334	Right-handed alpha
Helix 5	AA5	A	355	366	Right-handed alpha
Helix 6	AA6	A	367	372	Right-handed alpha
Helix 7	AA7	A	374	392	Right-handed alpha
Helix 8	AA8	A	411	416	Right-handed alpha
Helix 9	AA9	A	417	426	Right-handed alpha
Helix 10	AB1	A	431	445	Right-handed alpha
Helix 11	AB2	A	447	462	Right-handed alpha
Helix 12	AB3	A	467	500	Right-handed alpha
Helix 13	AB4	A	508	520	Right-handed alpha
Helix 14	AB5	A	532	539	Right-handed alpha
Helix 15	AB6	A	540	546	Right-handed 310
Helix 16	AB7	A	548	572	Right-handed alpha
Helix 17	AB8	A	579	598	Right-handed alpha
Helix 18	AB9	A	600	604	Right-handed 310
Helix 19	AC1	A	605	628	Right-handed alpha
Helix 20	AC2	A	634	639	Right-handed alpha
Helix 21	AC3	A	648	659	Right-handed alpha
Helix 22	AC4	A	660	670	Right-handed alpha
Helix 23	AC5	A	680	701	Right-handed alpha
Helix 24	AC6	A	705	723	Right-handed alpha
Helix 25	AC7	A	724	726	Right-handed 310
Helix 26	AC8	A	729	742	Right-handed alpha
Helix 27	AC9	A	750	765	Right-handed alpha
Helix 28	AD1	A	768	786	Right-handed alpha
Helix 29	AD2	A	799	812	Right-handed alpha
Helix 30	AD3	A	817	826	Right-handed alpha
Helix 31	AD4	A	831	840	Right-handed alpha
Helix 32	AD5	A	841	845	Right-handed 310
Helix 33	AD6	A	846	855	Right-handed alpha
Helix 34	AD7	A	861	870	Right-handed alpha
Helix 35	AD8	A	878	903	Right-handed alpha
Helix 36	AD9	A	914	922	Right-handed alpha
Helix 37	AE1	A	929	934	Right-handed 310
Helix 38	AE2	A	937	945	Right-handed alpha
Helix 39	AE3	A	950	954	Right-handed 310
Helix 40	AE4	A	957	962	Right-handed 310
Helix 41	AE5	A	963	970	Right-handed alpha
Helix 42	AE6	A	973	976	Right-handed 310
Helix 43	AE7	A	977	991	Right-handed alpha
Helix 44	AE8	A	993	1003	Right-handed alpha
Helix 45	AE9	B	304	317	Right-handed alpha
Helix 46	AF1	B	318	321	Right-handed 310
Helix 47	AF2	B	329	334	Right-handed alpha
Helix 48	AF3	B	355	365	Right-handed alpha
Helix 49	AF4	B	366	371	Right-handed alpha
Helix 50	AF5	B	374	392	Right-handed alpha
Helix 51	AF6	B	417	427	Right-handed alpha
Helix 52	AF7	B	431	445	Right-handed alpha
Helix 53	AF8	B	447	462	Right-handed alpha
Helix 54	AF9	B	463	466	Right-handed 310
Helix 55	AG1	B	468	501	Right-handed alpha
Helix 56	AG2	B	508	519	Right-handed alpha
Helix 57	AG3	B	525	530	Right-handed alpha
Helix 58	AG4	B	532	539	Right-handed alpha
Helix 59	AG5	B	540	544	Right-handed 310
Helix 60	AG6	B	548	551	Right-handed 310
Helix 61	AG7	B	552	570	Right-handed alpha
Helix 62	AG8	B	581	598	Right-handed alpha
Helix 63	AG9	B	605	628	Right-handed alpha
Helix 64	AH1	B	648	658	Right-handed alpha
Helix 65	AH2	B	660	671	Right-handed alpha
Helix 66	AH3	B	672	676	Right-handed 310
Helix 67	AH4	B	680	701	Right-handed alpha
Helix 68	AH5	B	705	723	Right-handed alpha
Helix 69	AH6	B	724	726	Right-handed 310
Helix 70	AH7	B	729	742	Right-handed alpha
Helix 71	AH8	B	750	762	Right-handed alpha
Helix 72	AH9	B	768	786	Right-handed alpha
Helix 73	AI1	B	800	812	Right-handed alpha
Helix 74	AI2	B	818	827	Right-handed alpha
Helix 75	AI3	B	833	841	Right-handed alpha
Helix 76	AI4	B	846	856	Right-handed alpha
Helix 77	AI5	B	861	871	Right-handed alpha
Helix 78	AI6	B	878	903	Right-handed alpha
Helix 79	AI7	B	911	922	Right-handed alpha
Helix 80	AI8	B	928	934	Right-handed 310
Helix 81	AI9	B	937	945	Right-handed alpha
Helix 82	AJ1	B	946	949	Right-handed 310
Helix 83	AJ2	B	950	954	Right-handed 310
Helix 84	AJ3	B	955	962	Right-handed 310
Helix 85	AJ4	B	963	973	Right-handed alpha
Helix 86	AJ5	B	976	991	Right-handed alpha
Helix 87	AJ6	B	993	1003	Right-handed alpha
Helix 88	AJ7	C	71	78	Right-handed alpha
Helix 89	AJ8	D	39	43	Right-handed 310
Helix 90	AJ9	D	70	78	Right-handed alpha

There are 8 sheets in PDB entry 8YGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	346	348	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	405	first strand
Strand 2	C	4	5	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	575	first strand
Strand 2	C	31	36	anti-parallel
Strand 3	C	57	63	anti-parallel
Strand 4	C	218	222	anti-parallel
Strand 5	C	198	200	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	907	first strand
Strand 2	D	232	236	anti-parallel
Strand 3	D	187	195	anti-parallel
Strand 4	D	172	180	anti-parallel
Strand 5	D	11	14	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	346	348	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	575	first strand
Strand 2	D	31	35	anti-parallel
Strand 3	D	58	63	anti-parallel
Strand 4	D	218	221	anti-parallel
Strand 5	D	199	200	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	21	24	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	180	first strand
Strand 2	C	187	195	anti-parallel
Strand 3	C	233	236	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YGO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGO