Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YGP entry

There are 8 chains in PDB entry 8YGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	ILE 1005
B	ASP 23	ILE 1005
C	MET 1	ASP 240
D	MET 1	ASP 240
E	ASP 23	ILE 1005
F	ASP 23	ILE 1005
G	MET 1	ASP 240
H	MET 1	ASP 240

There are232 helices in PDB entry 8YGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	39	Right-handed alpha
Helix 2	AA2	A	47	53	Right-handed alpha
Helix 3	AA3	A	58	72	Right-handed alpha
Helix 4	AA4	A	82	95	Right-handed alpha
Helix 5	AA5	A	96	109	Right-handed alpha
Helix 6	AA6	A	115	123	Right-handed alpha
Helix 7	AA7	A	136	146	Right-handed alpha
Helix 8	AA8	A	154	160	Right-handed alpha
Helix 9	AA9	A	186	197	Right-handed alpha
Helix 10	AB1	A	197	211	Right-handed alpha
Helix 11	AB2	A	223	234	Right-handed alpha
Helix 12	AB3	A	254	265	Right-handed alpha
Helix 13	AB4	A	272	274	Right-handed 310
Helix 14	AB5	A	281	296	Right-handed alpha
Helix 15	AB6	A	305	317	Right-handed alpha
Helix 16	AB7	A	318	321	Right-handed 310
Helix 17	AB8	A	326	330	Right-handed 310
Helix 18	AB9	A	355	366	Right-handed alpha
Helix 19	AC1	A	367	373	Right-handed 310
Helix 20	AC2	A	374	391	Right-handed alpha
Helix 21	AC3	A	417	425	Right-handed alpha
Helix 22	AC4	A	431	445	Right-handed alpha
Helix 23	AC5	A	449	462	Right-handed alpha
Helix 24	AC6	A	468	493	Right-handed alpha
Helix 25	AC7	A	495	500	Right-handed alpha
Helix 26	AC8	A	508	521	Right-handed alpha
Helix 27	AC9	A	527	531	Right-handed 310
Helix 28	AD1	A	532	539	Right-handed alpha
Helix 29	AD2	A	548	572	Right-handed alpha
Helix 30	AD3	A	580	598	Right-handed alpha
Helix 31	AD4	A	600	604	Right-handed 310
Helix 32	AD5	A	607	627	Right-handed alpha
Helix 33	AD6	A	634	639	Right-handed alpha
Helix 34	AD7	A	648	659	Right-handed alpha
Helix 35	AD8	A	661	670	Right-handed alpha
Helix 36	AD9	A	680	694	Right-handed alpha
Helix 37	AE1	A	705	712	Right-handed alpha
Helix 38	AE2	A	716	722	Right-handed alpha
Helix 39	AE3	A	729	736	Right-handed alpha
Helix 40	AE4	A	750	761	Right-handed alpha
Helix 41	AE5	A	771	786	Right-handed alpha
Helix 42	AE6	A	803	812	Right-handed alpha
Helix 43	AE7	A	818	827	Right-handed alpha
Helix 44	AE8	A	831	840	Right-handed alpha
Helix 45	AE9	A	841	845	Right-handed 310
Helix 46	AF1	A	846	855	Right-handed alpha
Helix 47	AF2	A	861	871	Right-handed alpha
Helix 48	AF3	A	878	903	Right-handed alpha
Helix 49	AF4	A	912	922	Right-handed alpha
Helix 50	AF5	A	928	934	Right-handed 310
Helix 51	AF6	A	937	945	Right-handed alpha
Helix 52	AF7	A	950	954	Right-handed 310
Helix 53	AF8	A	955	962	Right-handed 310
Helix 54	AF9	A	963	971	Right-handed alpha
Helix 55	AG1	A	979	990	Right-handed alpha
Helix 56	AG2	A	994	1003	Right-handed alpha
Helix 57	AG3	B	24	39	Right-handed alpha
Helix 58	AG4	B	48	53	Right-handed alpha
Helix 59	AG5	B	58	63	Right-handed alpha
Helix 60	AG6	B	63	71	Right-handed alpha
Helix 61	AG7	B	82	96	Right-handed alpha
Helix 62	AG8	B	96	109	Right-handed alpha
Helix 63	AG9	B	115	124	Right-handed alpha
Helix 64	AH1	B	136	146	Right-handed alpha
Helix 65	AH2	B	157	161	Right-handed 310
Helix 66	AH3	B	186	192	Right-handed alpha
Helix 67	AH4	B	197	211	Right-handed alpha
Helix 68	AH5	B	222	237	Right-handed alpha
Helix 69	AH6	B	254	265	Right-handed alpha
Helix 70	AH7	B	272	274	Right-handed 310
Helix 71	AH8	B	282	294	Right-handed alpha
Helix 72	AH9	B	298	302	Right-handed 310
Helix 73	AI1	B	304	317	Right-handed alpha
Helix 74	AI2	B	318	322	Right-handed 310
Helix 75	AI3	B	326	331	Right-handed alpha
Helix 76	AI4	B	355	365	Right-handed alpha
Helix 77	AI5	B	366	371	Right-handed alpha
Helix 78	AI6	B	374	392	Right-handed alpha
Helix 79	AI7	B	412	416	Right-handed 310
Helix 80	AI8	B	417	427	Right-handed alpha
Helix 81	AI9	B	431	446	Right-handed alpha
Helix 82	AJ1	B	448	466	Right-handed alpha
Helix 83	AJ2	B	467	493	Right-handed alpha
Helix 84	AJ3	B	495	501	Right-handed alpha
Helix 85	AJ4	B	508	519	Right-handed alpha
Helix 86	AJ5	B	523	529	Right-handed 310
Helix 87	AJ6	B	540	546	Right-handed 310
Helix 88	AJ7	B	547	550	Right-handed 310
Helix 89	AJ8	B	551	569	Right-handed alpha
Helix 90	AJ9	B	581	591	Right-handed alpha
Helix 91	AK1	B	591	599	Right-handed alpha
Helix 92	AK2	B	605	628	Right-handed alpha
Helix 93	AK3	B	648	659	Right-handed alpha
Helix 94	AK4	B	683	700	Right-handed alpha
Helix 95	AK5	B	705	722	Right-handed alpha
Helix 96	AK6	B	731	743	Right-handed alpha
Helix 97	AK7	B	750	762	Right-handed alpha
Helix 98	AK8	B	768	786	Right-handed alpha
Helix 99	AK9	B	801	812	Right-handed alpha
Helix 100	AL1	B	818	827	Right-handed alpha
Helix 101	AL2	B	834	841	Right-handed alpha
Helix 102	AL3	B	846	856	Right-handed alpha
Helix 103	AL4	B	861	871	Right-handed alpha
Helix 104	AL5	B	878	903	Right-handed alpha
Helix 105	AL6	B	911	922	Right-handed alpha
Helix 106	AL7	B	929	934	Right-handed 310
Helix 107	AL8	B	937	945	Right-handed alpha
Helix 108	AL9	B	950	954	Right-handed 310
Helix 109	AM1	B	955	960	Right-handed 310
Helix 110	AM2	B	964	972	Right-handed alpha
Helix 111	AM3	B	976	991	Right-handed alpha
Helix 112	AM4	B	994	999	Right-handed alpha
Helix 113	AM5	C	69	78	Right-handed alpha
Helix 114	AM6	D	70	78	Right-handed alpha
Helix 115	AM7	E	24	39	Right-handed alpha
Helix 116	AM8	E	47	54	Right-handed alpha
Helix 117	AM9	E	58	71	Right-handed alpha
Helix 118	AN1	E	82	95	Right-handed alpha
Helix 119	AN2	E	97	108	Right-handed alpha
Helix 120	AN3	E	115	124	Right-handed alpha
Helix 121	AN4	E	136	146	Right-handed alpha
Helix 122	AN5	E	154	159	Right-handed alpha
Helix 123	AN6	E	186	192	Right-handed alpha
Helix 124	AN7	E	192	197	Right-handed alpha
Helix 125	AN8	E	197	211	Right-handed alpha
Helix 126	AN9	E	222	234	Right-handed alpha
Helix 127	AO1	E	254	265	Right-handed alpha
Helix 128	AO2	E	283	295	Right-handed alpha
Helix 129	AO3	E	297	301	Right-handed 310
Helix 130	AO4	E	305	317	Right-handed alpha
Helix 131	AO5	E	318	322	Right-handed 310
Helix 132	AO6	E	355	366	Right-handed alpha
Helix 133	AO7	E	367	372	Right-handed 310
Helix 134	AO8	E	374	392	Right-handed alpha
Helix 135	AO9	E	396	400	Right-handed 310
Helix 136	AP1	E	418	425	Right-handed alpha
Helix 137	AP2	E	431	446	Right-handed alpha
Helix 138	AP3	E	447	461	Right-handed alpha
Helix 139	AP4	E	468	495	Right-handed alpha
Helix 140	AP5	E	495	501	Right-handed alpha
Helix 141	AP6	E	508	520	Right-handed alpha
Helix 142	AP7	E	533	538	Right-handed alpha
Helix 143	AP8	E	539	544	Right-handed 310
Helix 144	AP9	E	548	572	Right-handed alpha
Helix 145	AQ1	E	581	598	Right-handed alpha
Helix 146	AQ2	E	600	604	Right-handed 310
Helix 147	AQ3	E	605	625	Right-handed alpha
Helix 148	AQ4	E	649	659	Right-handed alpha
Helix 149	AQ5	E	660	670	Right-handed alpha
Helix 150	AQ6	E	680	701	Right-handed alpha
Helix 151	AQ7	E	705	711	Right-handed alpha
Helix 152	AQ8	E	712	722	Right-handed alpha
Helix 153	AQ9	E	729	734	Right-handed alpha
Helix 154	AR1	E	735	743	Right-handed alpha
Helix 155	AR2	E	750	765	Right-handed alpha
Helix 156	AR3	E	768	786	Right-handed alpha
Helix 157	AR4	E	799	812	Right-handed alpha
Helix 158	AR5	E	817	826	Right-handed alpha
Helix 159	AR6	E	832	841	Right-handed alpha
Helix 160	AR7	E	842	845	Right-handed 310
Helix 161	AR8	E	846	852	Right-handed alpha
Helix 162	AR9	E	861	871	Right-handed alpha
Helix 163	AS1	E	878	903	Right-handed alpha
Helix 164	AS2	E	912	922	Right-handed alpha
Helix 165	AS3	E	927	933	Right-handed 310
Helix 166	AS4	E	937	944	Right-handed alpha
Helix 167	AS5	E	955	962	Right-handed 310
Helix 168	AS6	E	963	971	Right-handed alpha
Helix 169	AS7	E	973	977	Right-handed 310
Helix 170	AS8	E	978	989	Right-handed alpha
Helix 171	AS9	E	994	1001	Right-handed alpha
Helix 172	AT1	F	24	39	Right-handed alpha
Helix 173	AT2	F	48	54	Right-handed alpha
Helix 174	AT3	F	58	71	Right-handed alpha
Helix 175	AT4	F	80	85	Right-handed alpha
Helix 176	AT5	F	85	95	Right-handed alpha
Helix 177	AT6	F	96	109	Right-handed alpha
Helix 178	AT7	F	115	124	Right-handed alpha
Helix 179	AT8	F	136	146	Right-handed alpha
Helix 180	AT9	F	154	159	Right-handed alpha
Helix 181	AU1	F	179	183	Right-handed 310
Helix 182	AU2	F	186	192	Right-handed alpha
Helix 183	AU3	F	192	197	Right-handed alpha
Helix 184	AU4	F	197	211	Right-handed alpha
Helix 185	AU5	F	222	227	Right-handed alpha
Helix 186	AU6	F	229	236	Right-handed alpha
Helix 187	AU7	F	254	264	Right-handed alpha
Helix 188	AU8	F	270	274	Right-handed 310
Helix 189	AU9	F	281	294	Right-handed alpha
Helix 190	AV1	F	298	302	Right-handed 310
Helix 191	AV2	F	304	317	Right-handed alpha
Helix 192	AV3	F	318	322	Right-handed 310
Helix 193	AV4	F	327	333	Right-handed 310
Helix 194	AV5	F	355	363	Right-handed alpha
Helix 195	AV6	F	367	373	Right-handed 310
Helix 196	AV7	F	374	391	Right-handed alpha
Helix 197	AV8	F	417	427	Right-handed alpha
Helix 198	AV9	F	431	446	Right-handed alpha
Helix 199	AW1	F	447	462	Right-handed alpha
Helix 200	AW2	F	468	494	Right-handed alpha
Helix 201	AW3	F	495	500	Right-handed alpha
Helix 202	AW4	F	508	519	Right-handed alpha
Helix 203	AW5	F	524	529	Right-handed alpha
Helix 204	AW6	F	534	539	Right-handed alpha
Helix 205	AW7	F	540	544	Right-handed 310
Helix 206	AW8	F	549	569	Right-handed alpha
Helix 207	AW9	F	581	598	Right-handed alpha
Helix 208	AX1	F	600	604	Right-handed 310
Helix 209	AX2	F	605	628	Right-handed alpha
Helix 210	AX3	F	648	658	Right-handed alpha
Helix 211	AX4	F	660	671	Right-handed alpha
Helix 212	AX5	F	672	676	Right-handed 310
Helix 213	AX6	F	680	701	Right-handed alpha
Helix 214	AX7	F	705	710	Right-handed alpha
Helix 215	AX8	F	712	722	Right-handed alpha
Helix 216	AX9	F	729	743	Right-handed alpha
Helix 217	AY1	F	750	762	Right-handed alpha
Helix 218	AY2	F	768	787	Right-handed alpha
Helix 219	AY3	F	802	811	Right-handed alpha
Helix 220	AY4	F	819	826	Right-handed alpha
Helix 221	AY5	F	832	838	Right-handed alpha
Helix 222	AY6	F	839	845	Right-handed 310
Helix 223	AY7	F	846	855	Right-handed alpha
Helix 224	AY8	F	864	872	Right-handed alpha
Helix 225	AY9	F	882	903	Right-handed alpha
Helix 226	AZ1	F	912	922	Right-handed alpha
Helix 227	AZ2	F	937	945	Right-handed alpha
Helix 228	AZ3	F	957	961	Right-handed 310
Helix 229	AZ4	F	965	971	Right-handed alpha
Helix 230	AZ5	F	977	990	Right-handed alpha
Helix 231	AZ6	F	993	1002	Right-handed alpha
Helix 232	AZ7	G	70	78	Right-handed alpha

There are 19 sheets in PDB entry 8YGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	129	131	parallel
Strand 4	A	42	45	parallel
Strand 5	A	212	215	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	346	348	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	575	first strand
Strand 2	C	31	35	anti-parallel
Strand 3	C	58	64	anti-parallel
Strand 4	C	217	222	anti-parallel
Strand 5	C	198	200	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	906	first strand
Strand 2	D	233	236	anti-parallel
Strand 3	D	187	195	anti-parallel
Strand 4	D	172	180	anti-parallel
Strand 5	D	10	14	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	267	270	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	346	348	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	10	15	anti-parallel
Strand 3	C	172	180	anti-parallel
Strand 4	C	187	195	anti-parallel
Strand 5	C	233	236	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	60	63	anti-parallel
Strand 3	D	218	221	anti-parallel
Strand 4	D	199	200	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	37	first strand
Strand 2	D	56	58	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	152	first strand
Strand 2	E	166	169	parallel
Strand 3	E	128	131	parallel
Strand 4	E	42	46	parallel
Strand 5	E	212	216	parallel
Strand 6	E	244	247	parallel
Strand 7	E	267	270	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	340	first strand
Strand 2	E	346	348	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	904	908	first strand
Strand 2	H	230	236	anti-parallel
Strand 3	H	187	195	anti-parallel
Strand 4	H	172	180	anti-parallel
Strand 5	H	10	15	anti-parallel
Strand 6	H	20	21	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	152	first strand
Strand 2	F	166	169	parallel
Strand 3	F	129	131	parallel
Strand 4	F	42	46	parallel
Strand 5	F	212	216	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	245	first strand
Strand 2	F	267	268	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	339	first strand
Strand 2	F	347	348	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	574	575	first strand
Strand 2	H	31	37	anti-parallel
Strand 3	H	56	63	anti-parallel
Strand 4	H	218	221	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	24	first strand
Strand 2	G	10	14	anti-parallel
Strand 3	G	172	180	anti-parallel
Strand 4	G	187	194	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	63	first strand
Strand 2	G	218	222	anti-parallel
Strand 3	G	198	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGP