Analysis of interatomic Contacts of Structural Units in PDB entry:
8YGY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YGY entry

There is 1 chain in PDB entry 8YGY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 25SER 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8YGY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 67Right-handed 310
Helix 2
AA2
A
102 107Right-handed 310
Helix 3
AA3
A
181 189Right-handed alpha
Helix 4
AA4
A
250 261Right-handed alpha
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There are 2 sheets in PDB entry 8YGY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
173 180anti-parallel
Strand 3
A
197 201anti-parallel
Strand 4
A
242 246anti-parallel
Strand 5
A
223 228anti-parallel
Strand 6
A
217 220anti-parallel
Strand 7
A
152 157anti-parallel
Strand 8
A
173 180anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
72 75anti-parallel
Strand 3
A
39 44anti-parallel
Strand 4
A
47 56anti-parallel
Strand 5
A
59 62anti-parallel
Strand 6
A
122 126anti-parallel
Strand 7
A
92 97anti-parallel
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