Analysis of interatomic Contacts of Structural Units in PDB entry:
8YH2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YH2 entry

There are 5 chains in PDB entry 8YH2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 5	ASN 340
G	ILE 9	PHE 61
R	SER 9	ILE 295
A	THR 4	PHE 354
S	VAL 2	LEU 235

There are 30 helices in PDB entry 8YH2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	6	26	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	G	10	24	Right-handed alpha
Helix 4	AA4	G	29	44	Right-handed alpha
Helix 5	AA5	R	10	40	Right-handed alpha
Helix 6	AA6	R	41	44	Right-handed 310
Helix 7	AA7	R	45	64	Right-handed alpha
Helix 8	AA8	R	64	75	Right-handed alpha
Helix 9	AA9	R	79	115	Right-handed alpha
Helix 10	AB1	R	117	122	Right-handed alpha
Helix 11	AB2	R	123	144	Right-handed alpha
Helix 12	AB3	R	145	148	Right-handed 310
Helix 13	AB4	R	150	155	Right-handed alpha
Helix 14	AB5	R	166	171	Right-handed alpha
Helix 15	AB6	R	172	179	Right-handed alpha
Helix 16	AB7	R	179	185	Right-handed alpha
Helix 17	AB8	R	185	207	Right-handed alpha
Helix 18	AB9	R	225	254	Right-handed alpha
Helix 19	AC1	R	259	282	Right-handed alpha
Helix 20	AC2	R	285	295	Right-handed alpha
Helix 21	AC3	A	8	31	Right-handed alpha
Helix 22	AC4	A	45	53	Right-handed alpha
Helix 23	AC5	A	211	216	Right-handed 310
Helix 24	AC6	A	242	256	Right-handed alpha
Helix 25	AC7	A	295	310	Right-handed alpha
Helix 26	AC8	A	330	352	Right-handed alpha
Helix 27	AC9	S	28	32	Right-handed 310
Helix 28	AD1	S	53	56	Right-handed 310
Helix 29	AD2	S	87	91	Right-handed 310
Helix 30	AD3	S	208	212	Right-handed 310

There are 12 sheets in PDB entry 8YH2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	113	anti-parallel
Strand 3	B	123	125	anti-parallel
Strand 4	B	134	137	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	169	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	250	253	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	294	297	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	33	40	parallel
Strand 4	A	220	224	parallel
Strand 5	A	263	267	parallel
Strand 6	A	319	322	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	18	25	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	69	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	40	anti-parallel
Strand 5	S	44	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	130	first strand
Strand 2	S	143	149	anti-parallel
Strand 3	S	199	204	anti-parallel
Strand 4	S	191	196	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	134	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	214	219	anti-parallel
Strand 4	S	162	167	anti-parallel
Strand 5	S	175	177	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YH2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YH2