Analysis of interatomic Contacts of Structural Units in PDB entry:
8YH5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YH5 entry

There are 5 chains in PDB entry 8YH5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 5	ASN 340
G	ILE 9	PHE 61
S	VAL 2	LEU 235
A	THR 4	PHE 354
R	SER 9	ILE 295

There are 30 helices in PDB entry 8YH5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	6	25	Right-handed alpha
Helix 2	AA2	B	29	35	Right-handed alpha
Helix 3	AA3	G	12	24	Right-handed alpha
Helix 4	AA4	G	33	44	Right-handed alpha
Helix 5	AA5	S	28	32	Right-handed 310
Helix 6	AA6	S	53	56	Right-handed 310
Helix 7	AA7	S	208	212	Right-handed 310
Helix 8	AA8	A	6	31	Right-handed alpha
Helix 9	AA9	A	45	53	Right-handed alpha
Helix 10	AB1	A	202	204	Right-handed 310
Helix 11	AB2	A	211	216	Right-handed 310
Helix 12	AB3	A	242	256	Right-handed alpha
Helix 13	AB4	A	275	281	Right-handed 310
Helix 14	AB5	A	295	310	Right-handed alpha
Helix 15	AB6	A	330	352	Right-handed alpha
Helix 16	AB7	R	10	40	Right-handed alpha
Helix 17	AB8	R	45	64	Right-handed alpha
Helix 18	AB9	R	64	75	Right-handed alpha
Helix 19	AC1	R	79	115	Right-handed alpha
Helix 20	AC2	R	117	122	Right-handed alpha
Helix 21	AC3	R	123	144	Right-handed alpha
Helix 22	AC4	R	145	148	Right-handed 310
Helix 23	AC5	R	150	154	Right-handed 310
Helix 24	AC6	R	166	171	Right-handed alpha
Helix 25	AC7	R	172	179	Right-handed alpha
Helix 26	AC8	R	179	185	Right-handed alpha
Helix 27	AC9	R	185	207	Right-handed alpha
Helix 28	AD1	R	225	254	Right-handed alpha
Helix 29	AD2	R	259	282	Right-handed alpha
Helix 30	AD3	R	285	295	Right-handed alpha

There are 12 sheets in PDB entry 8YH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	222	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	263	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	19	25	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	40	anti-parallel
Strand 5	S	44	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	129	130	first strand
Strand 2	S	143	148	anti-parallel
Strand 3	S	199	204	anti-parallel
Strand 4	S	191	196	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	135	136	first strand
Strand 2	S	232	234	parallel
Strand 3	S	213	219	anti-parallel
Strand 4	S	162	167	anti-parallel
Strand 5	S	175	177	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	221	224	parallel
Strand 5	A	264	267	parallel
Strand 6	A	319	322	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YH5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YH5