Analysis of interatomic Contacts of Structural Units in PDB entry:
8YH8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YH8 entry

There are 8 chains in PDB entry 8YH8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 26	VAL 499
B	ASP 27	SER 501
C	SER 26	SER 501
D	THR 2	VAL 471
E	MET 1	GLY 470
F	MET 1	VAL 471
G	SER 6	LEU 287
H	MET 1	ASP 87

There are133 helices in PDB entry 8YH8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	104	Right-handed 310
Helix 2	AA2	A	150	157	Right-handed alpha
Helix 3	AA3	A	175	185	Right-handed alpha
Helix 4	AA4	A	186	189	Right-handed 310
Helix 5	AA5	A	201	215	Right-handed alpha
Helix 6	AA6	A	216	220	Right-handed 310
Helix 7	AA7	A	231	253	Right-handed alpha
Helix 8	AA8	A	262	277	Right-handed alpha
Helix 9	AA9	A	289	299	Right-handed alpha
Helix 10	AB1	A	305	309	Right-handed 310
Helix 11	AB2	A	328	338	Right-handed alpha
Helix 12	AB3	A	345	351	Right-handed alpha
Helix 13	AB4	A	372	393	Right-handed alpha
Helix 14	AB5	A	394	402	Right-handed 310
Helix 15	AB6	A	403	420	Right-handed alpha
Helix 16	AB7	A	429	442	Right-handed alpha
Helix 17	AB8	A	452	468	Right-handed alpha
Helix 18	AB9	A	468	479	Right-handed alpha
Helix 19	AC1	A	483	496	Right-handed alpha
Helix 20	AC2	B	78	82	Right-handed 310
Helix 21	AC3	B	100	104	Right-handed 310
Helix 22	AC4	B	135	139	Right-handed 310
Helix 23	AC5	B	150	157	Right-handed alpha
Helix 24	AC6	B	174	186	Right-handed alpha
Helix 25	AC7	B	187	189	Right-handed 310
Helix 26	AC8	B	201	215	Right-handed alpha
Helix 27	AC9	B	216	220	Right-handed 310
Helix 28	AD1	B	231	253	Right-handed alpha
Helix 29	AD2	B	262	277	Right-handed alpha
Helix 30	AD3	B	282	286	Right-handed 310
Helix 31	AD4	B	289	299	Right-handed alpha
Helix 32	AD5	B	305	309	Right-handed 310
Helix 33	AD6	B	328	338	Right-handed alpha
Helix 34	AD7	B	345	351	Right-handed alpha
Helix 35	AD8	B	367	371	Right-handed 310
Helix 36	AD9	B	372	399	Right-handed alpha
Helix 37	AE1	B	403	421	Right-handed alpha
Helix 38	AE2	B	429	442	Right-handed alpha
Helix 39	AE3	B	452	468	Right-handed alpha
Helix 40	AE4	B	468	479	Right-handed alpha
Helix 41	AE5	B	483	496	Right-handed alpha
Helix 42	AE6	C	100	104	Right-handed 310
Helix 43	AE7	C	135	139	Right-handed 310
Helix 44	AE8	C	150	157	Right-handed alpha
Helix 45	AE9	C	174	186	Right-handed alpha
Helix 46	AF1	C	187	189	Right-handed 310
Helix 47	AF2	C	201	215	Right-handed alpha
Helix 48	AF3	C	216	220	Right-handed 310
Helix 49	AF4	C	231	251	Right-handed alpha
Helix 50	AF5	C	262	278	Right-handed alpha
Helix 51	AF6	C	289	300	Right-handed alpha
Helix 52	AF7	C	305	309	Right-handed 310
Helix 53	AF8	C	328	338	Right-handed alpha
Helix 54	AF9	C	345	351	Right-handed alpha
Helix 55	AG1	C	372	379	Right-handed alpha
Helix 56	AG2	C	381	399	Right-handed alpha
Helix 57	AG3	C	403	420	Right-handed alpha
Helix 58	AG4	C	429	442	Right-handed alpha
Helix 59	AG5	C	449	451	Right-handed 310
Helix 60	AG6	C	452	468	Right-handed alpha
Helix 61	AG7	C	468	479	Right-handed alpha
Helix 62	AG8	C	483	498	Right-handed alpha
Helix 63	AG9	D	88	92	Right-handed 310
Helix 64	AH1	D	124	128	Right-handed 310
Helix 65	AH2	D	139	146	Right-handed alpha
Helix 66	AH3	D	163	176	Right-handed alpha
Helix 67	AH4	D	191	206	Right-handed alpha
Helix 68	AH5	D	207	209	Right-handed 310
Helix 69	AH6	D	221	242	Right-handed alpha
Helix 70	AH7	D	254	269	Right-handed alpha
Helix 71	AH8	D	273	277	Right-handed 310
Helix 72	AH9	D	280	290	Right-handed alpha
Helix 73	AI1	D	315	322	Right-handed alpha
Helix 74	AI2	D	323	325	Right-handed 310
Helix 75	AI3	D	332	339	Right-handed alpha
Helix 76	AI4	D	351	355	Right-handed 310
Helix 77	AI5	D	356	361	Right-handed alpha
Helix 78	AI6	D	361	386	Right-handed alpha
Helix 79	AI7	D	387	392	Right-handed alpha
Helix 80	AI8	D	394	410	Right-handed alpha
Helix 81	AI9	D	414	416	Right-handed 310
Helix 82	AJ1	D	417	422	Right-handed alpha
Helix 83	AJ2	D	429	443	Right-handed alpha
Helix 84	AJ3	D	449	454	Right-handed 310
Helix 85	AJ4	D	458	470	Right-handed alpha
Helix 86	AJ5	E	88	92	Right-handed 310
Helix 87	AJ6	E	139	146	Right-handed alpha
Helix 88	AJ7	E	163	179	Right-handed alpha
Helix 89	AJ8	E	191	205	Right-handed alpha
Helix 90	AJ9	E	206	210	Right-handed 310
Helix 91	AK1	E	221	243	Right-handed alpha
Helix 92	AK2	E	253	269	Right-handed alpha
Helix 93	AK3	E	273	277	Right-handed 310
Helix 94	AK4	E	280	290	Right-handed alpha
Helix 95	AK5	E	315	323	Right-handed alpha
Helix 96	AK6	E	332	339	Right-handed alpha
Helix 97	AK7	E	347	353	Right-handed alpha
Helix 98	AK8	E	361	385	Right-handed alpha
Helix 99	AK9	E	387	410	Right-handed alpha
Helix 100	AL1	E	414	420	Right-handed 310
Helix 101	AL2	E	429	443	Right-handed alpha
Helix 102	AL3	E	449	454	Right-handed 310
Helix 103	AL4	E	458	470	Right-handed alpha
Helix 104	AL5	F	88	92	Right-handed 310
Helix 105	AL6	F	124	128	Right-handed 310
Helix 106	AL7	F	139	146	Right-handed alpha
Helix 107	AL8	F	163	176	Right-handed alpha
Helix 108	AL9	F	191	205	Right-handed alpha
Helix 109	AM1	F	206	212	Right-handed alpha
Helix 110	AM2	F	221	226	Right-handed alpha
Helix 111	AM3	F	227	244	Right-handed alpha
Helix 112	AM4	F	254	266	Right-handed alpha
Helix 113	AM5	F	273	277	Right-handed 310
Helix 114	AM6	F	280	290	Right-handed alpha
Helix 115	AM7	F	315	322	Right-handed alpha
Helix 116	AM8	F	323	325	Right-handed 310
Helix 117	AM9	F	332	339	Right-handed alpha
Helix 118	AN1	F	350	355	Right-handed alpha
Helix 119	AN2	F	361	388	Right-handed alpha
Helix 120	AN3	F	389	392	Right-handed 310
Helix 121	AN4	F	393	410	Right-handed alpha
Helix 122	AN5	F	414	420	Right-handed 310
Helix 123	AN6	F	429	443	Right-handed alpha
Helix 124	AN7	F	449	454	Right-handed 310
Helix 125	AN8	F	458	470	Right-handed alpha
Helix 126	AN9	G	7	45	Right-handed alpha
Helix 127	AO1	G	45	61	Right-handed alpha
Helix 128	AO2	G	68	72	Right-handed 310
Helix 129	AO3	G	93	109	Right-handed alpha
Helix 130	AO4	G	112	114	Right-handed 310
Helix 131	AO5	G	122	131	Right-handed alpha
Helix 132	AO6	G	152	165	Right-handed alpha
Helix 133	AO7	G	211	287	Right-handed alpha

There are 26 sheets in PDB entry 8YH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	35	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	71	75	anti-parallel
Strand 4	A	60	66	anti-parallel
Strand 5	A	51	55	anti-parallel
Strand 6	A	87	94	anti-parallel
Strand 7	A	28	35	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	125	128	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	192	198	parallel
Strand 3	A	255	260	parallel
Strand 4	A	312	321	parallel
Strand 5	A	166	170	parallel
Strand 6	A	340	343	parallel
Strand 7	A	363	364	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	66	first strand
Strand 2	B	51	55	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	28	35	anti-parallel
Strand 5	B	38	43	anti-parallel
Strand 6	B	71	75	anti-parallel
Strand 7	B	60	66	anti-parallel
Strand 8	F	3	10	anti-parallel
Strand 9	F	75	78	anti-parallel
Strand 10	F	29	34	anti-parallel
Strand 11	F	44	53	anti-parallel
Strand 12	F	58	63	anti-parallel
Strand 13	F	13	17	anti-parallel
Strand 14	F	3	10	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	125	128	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	112	114	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	192	198	parallel
Strand 3	B	255	260	parallel
Strand 4	B	312	320	parallel
Strand 5	B	166	169	parallel
Strand 6	B	340	344	parallel
Strand 7	B	363	364	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	35	first strand
Strand 2	C	38	43	anti-parallel
Strand 3	C	71	75	anti-parallel
Strand 4	C	60	66	anti-parallel
Strand 5	C	51	55	anti-parallel
Strand 6	C	87	94	anti-parallel
Strand 7	C	28	35	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	125	128	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	226	first strand
Strand 2	C	191	198	parallel
Strand 3	C	255	261	parallel
Strand 4	C	312	320	parallel
Strand 5	C	302	303	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	226	first strand
Strand 2	C	191	198	parallel
Strand 3	C	255	261	parallel
Strand 4	C	312	320	parallel
Strand 5	C	166	169	parallel
Strand 6	C	340	343	parallel
Strand 7	C	363	364	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	10	first strand
Strand 2	D	13	18	anti-parallel
Strand 3	D	58	63	anti-parallel
Strand 4	D	44	54	anti-parallel
Strand 5	D	29	34	anti-parallel
Strand 6	D	75	78	anti-parallel
Strand 7	D	3	10	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	D	115	117	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	211	216	parallel
Strand 3	D	182	188	parallel
Strand 4	D	246	252	parallel
Strand 5	D	299	307	parallel
Strand 6	D	153	158	parallel
Strand 7	D	327	330	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	148	149	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	10	first strand
Strand 2	E	13	17	anti-parallel
Strand 3	E	58	63	anti-parallel
Strand 4	E	44	55	anti-parallel
Strand 5	E	29	34	anti-parallel
Strand 6	E	75	78	anti-parallel
Strand 7	E	3	10	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	86	first strand
Strand 2	E	115	117	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	135	first strand
Strand 2	E	148	149	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	217	first strand
Strand 2	E	183	190	parallel
Strand 3	E	246	252	parallel
Strand 4	E	298	305	parallel
Strand 5	E	294	295	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	217	first strand
Strand 2	E	183	190	parallel
Strand 3	E	246	252	parallel
Strand 4	E	298	305	parallel
Strand 5	E	153	157	parallel
Strand 6	E	327	330	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	86	first strand
Strand 2	F	115	117	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	96	first strand
Strand 2	F	213	216	parallel
Strand 3	F	183	188	parallel
Strand 4	F	246	251	parallel
Strand 5	F	299	307	parallel
Strand 6	F	153	158	parallel
Strand 7	F	327	331	parallel
Strand 8	F	344	345	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	135	first strand
Strand 2	F	148	149	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	136	140	first strand
Strand 2	G	116	121	parallel
Strand 3	G	79	84	parallel
Strand 4	G	170	178	parallel
Strand 5	G	184	192	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	18	first strand
Strand 2	H	5	10	anti-parallel
Strand 3	H	74	78	parallel
Strand 4	H	67	70	anti-parallel
Strand 5	H	41	44	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	33	first strand
Strand 2	H	22	26	anti-parallel
Strand 3	H	48	54	anti-parallel
Strand 4	H	57	63	anti-parallel
Strand 5	H	82	84	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YH8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YH8