Analysis of interatomic Contacts of Structural Units in PDB entry:
8YH9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YH9 entry

There are 10 chains in PDB entry 8YH9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 255
B	MET 1	LEU 175
C	U 1	G 60
I	LEU 12	GLU 334
H	ARG 15	SER 330
G	ARG 15	GLN 333
F	LEU 12	LYS 331
E	ASN 18	LYS 331
D	ASN 18	LYS 335
J	HIS 35	LYS 340

There are 63 helices in PDB entry 8YH9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	46	Right-handed alpha
Helix 2	AA2	A	121	130	Right-handed alpha
Helix 3	AA3	A	174	185	Right-handed alpha
Helix 4	AA4	B	16	22	Right-handed alpha
Helix 5	AA5	B	24	35	Right-handed alpha
Helix 6	AA6	B	64	72	Right-handed alpha
Helix 7	AA7	B	72	77	Right-handed alpha
Helix 8	AA8	B	111	118	Right-handed alpha
Helix 9	AA9	B	125	135	Right-handed alpha
Helix 10	AB1	I	112	129	Right-handed alpha
Helix 11	AB2	I	131	144	Right-handed alpha
Helix 12	AB3	I	173	177	Right-handed 310
Helix 13	AB4	I	187	202	Right-handed alpha
Helix 14	AB5	I	250	257	Right-handed alpha
Helix 15	AB6	I	267	271	Right-handed 310
Helix 16	AB7	I	297	302	Right-handed alpha
Helix 17	AB8	I	312	326	Right-handed alpha
Helix 18	AB9	H	111	127	Right-handed alpha
Helix 19	AC1	H	131	144	Right-handed alpha
Helix 20	AC2	H	173	177	Right-handed 310
Helix 21	AC3	H	187	200	Right-handed alpha
Helix 22	AC4	H	250	258	Right-handed alpha
Helix 23	AC5	H	267	272	Right-handed alpha
Helix 24	AC6	H	299	303	Right-handed 310
Helix 25	AC7	H	312	326	Right-handed alpha
Helix 26	AC8	G	111	120	Right-handed alpha
Helix 27	AC9	G	122	127	Right-handed alpha
Helix 28	AD1	G	131	144	Right-handed alpha
Helix 29	AD2	G	145	153	Right-handed 310
Helix 30	AD3	G	186	201	Right-handed alpha
Helix 31	AD4	G	250	259	Right-handed alpha
Helix 32	AD5	G	312	326	Right-handed alpha
Helix 33	AD6	F	111	129	Right-handed alpha
Helix 34	AD7	F	131	144	Right-handed alpha
Helix 35	AD8	F	186	202	Right-handed alpha
Helix 36	AD9	F	250	259	Right-handed alpha
Helix 37	AE1	F	267	272	Right-handed alpha
Helix 38	AE2	F	296	305	Right-handed alpha
Helix 39	AE3	F	312	326	Right-handed alpha
Helix 40	AE4	E	111	129	Right-handed alpha
Helix 41	AE5	E	132	145	Right-handed alpha
Helix 42	AE6	E	148	153	Right-handed 310
Helix 43	AE7	E	187	201	Right-handed alpha
Helix 44	AE8	E	251	256	Right-handed alpha
Helix 45	AE9	E	267	272	Right-handed alpha
Helix 46	AF1	E	296	303	Right-handed alpha
Helix 47	AF2	E	313	326	Right-handed alpha
Helix 48	AF3	D	102	106	Right-handed 310
Helix 49	AF4	D	111	129	Right-handed alpha
Helix 50	AF5	D	132	144	Right-handed alpha
Helix 51	AF6	D	148	152	Right-handed 310
Helix 52	AF7	D	188	202	Right-handed alpha
Helix 53	AF8	D	250	259	Right-handed alpha
Helix 54	AF9	D	267	272	Right-handed alpha
Helix 55	AG1	D	296	306	Right-handed alpha
Helix 56	AG2	D	312	326	Right-handed alpha
Helix 57	AG3	J	166	179	Right-handed alpha
Helix 58	AG4	J	191	199	Right-handed alpha
Helix 59	AG5	J	200	206	Right-handed alpha
Helix 60	AG6	J	224	229	Right-handed alpha
Helix 61	AG7	J	255	264	Right-handed alpha
Helix 62	AG8	J	283	291	Right-handed alpha
Helix 63	AG9	J	324	339	Right-handed alpha

There are 32 sheets in PDB entry 8YH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	101	113	anti-parallel
Strand 3	A	51	59	anti-parallel
Strand 4	A	158	161	anti-parallel
Strand 5	A	215	229	anti-parallel
Strand 6	A	190	196	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	3	17	anti-parallel
Strand 3	A	101	113	anti-parallel
Strand 4	A	51	59	anti-parallel
Strand 5	A	158	161	anti-parallel
Strand 6	A	215	229	anti-parallel
Strand 7	J	158	164	parallel
Strand 8	J	149	153	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	J	213	214	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	74	76	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	251	253	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	42	first strand
Strand 2	B	57	62	anti-parallel
Strand 3	B	2	8	anti-parallel
Strand 4	B	84	86	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	42	first strand
Strand 2	B	57	62	anti-parallel
Strand 3	B	2	8	anti-parallel
Strand 4	B	91	92	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	154	162	anti-parallel
Strand 3	B	143	147	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	106	109	first strand
Strand 2	I	19	21	anti-parallel
Strand 3	I	327	328	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	27	first strand
Strand 2	I	90	99	anti-parallel
Strand 3	I	30	35	anti-parallel
Strand 4	I	207	213	first strand
Strand 5	I	161	164	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	46	first strand
Strand 2	I	30	35	anti-parallel
Strand 3	I	90	99	anti-parallel
Strand 4	I	248	249	first strand

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	50	53	first strand
Strand 2	I	78	81	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	27	first strand
Strand 2	H	90	99	anti-parallel
Strand 3	H	31	35	anti-parallel
Strand 4	H	45	46	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	27	first strand
Strand 2	H	90	99	anti-parallel
Strand 3	H	207	216	anti-parallel
Strand 4	H	158	162	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	242	243	first strand
Strand 2	H	246	247	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	27	first strand
Strand 2	G	97	99	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	46	first strand
Strand 2	G	31	35	anti-parallel
Strand 3	G	90	95	anti-parallel
Strand 4	G	211	212	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	55	first strand
Strand 2	G	76	81	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	164	first strand
Strand 2	G	167	168	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	242	243	first strand
Strand 2	G	246	247	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	21	first strand
Strand 2	F	327	329	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	F	30	35	anti-parallel
Strand 3	F	90	99	anti-parallel
Strand 4	F	207	215	anti-parallel
Strand 5	F	158	164	anti-parallel
Strand 6	F	167	168	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	F	30	35	anti-parallel
Strand 3	F	246	249	anti-parallel
Strand 4	F	242	243	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	78	79	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	26	first strand
Strand 2	E	91	99	anti-parallel
Strand 3	E	207	215	anti-parallel
Strand 4	E	158	161	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	32	first strand
Strand 2	E	246	249	anti-parallel
Strand 3	E	242	243	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	78	79	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	27	first strand
Strand 2	D	90	99	anti-parallel
Strand 3	D	30	35	anti-parallel
Strand 4	D	207	215	first strand
Strand 5	D	158	163	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	30	35	anti-parallel
Strand 3	D	90	99	anti-parallel
Strand 4	D	248	249	first strand

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	80	81	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	262	first strand
Strand 2	D	275	276	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	186	first strand
Strand 2	J	210	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YH9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YH9