Analysis of interatomic Contacts of Structural Units in PDB entry:
8YHA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YHA entry

There are 12 chains in PDB entry 8YHA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	GLN 376
B	MET 1	ILE 268
C	G 1	G 61
D	MET 1	TYR 375
E	MET 1	TYR 375
F	MET 1	SER 372
G	MET 1	GLN 370
H	MET 1	LYS 371
I	MET 1	LYS 365
J	VAL 80	ILE 521
K	ASN 2	ILE 166
T	T 3	T 49

There are121 helices in PDB entry 8YHA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	48	Right-handed alpha
Helix 2	AA2	A	51	56	Right-handed alpha
Helix 3	AA3	A	58	64	Right-handed alpha
Helix 4	AA4	A	144	157	Right-handed alpha
Helix 5	AA5	A	185	193	Right-handed alpha
Helix 6	AA6	A	280	294	Right-handed alpha
Helix 7	AA7	A	329	342	Right-handed alpha
Helix 8	AA8	A	357	372	Right-handed alpha
Helix 9	AA9	B	19	27	Right-handed alpha
Helix 10	AB1	B	27	37	Right-handed alpha
Helix 11	AB2	B	43	48	Right-handed alpha
Helix 12	AB3	B	56	60	Right-handed 310
Helix 13	AB4	B	91	96	Right-handed alpha
Helix 14	AB5	B	166	183	Right-handed alpha
Helix 15	AB6	B	240	251	Right-handed alpha
Helix 16	AB7	D	38	48	Right-handed alpha
Helix 17	AB8	D	63	68	Right-handed alpha
Helix 18	AB9	D	78	89	Right-handed alpha
Helix 19	AC1	D	104	106	Right-handed 310
Helix 20	AC2	D	107	117	Right-handed alpha
Helix 21	AC3	D	123	136	Right-handed alpha
Helix 22	AC4	D	141	146	Right-handed alpha
Helix 23	AC5	D	223	230	Right-handed alpha
Helix 24	AC6	D	233	250	Right-handed alpha
Helix 25	AC7	D	280	285	Right-handed 310
Helix 26	AC8	D	295	315	Right-handed alpha
Helix 27	AC9	D	328	332	Right-handed 310
Helix 28	AD1	D	349	363	Right-handed alpha
Helix 29	AD2	D	365	370	Right-handed alpha
Helix 30	AD3	E	38	48	Right-handed alpha
Helix 31	AD4	E	52	56	Right-handed 310
Helix 32	AD5	E	63	72	Right-handed alpha
Helix 33	AD6	E	76	88	Right-handed alpha
Helix 34	AD7	E	107	117	Right-handed alpha
Helix 35	AD8	E	121	136	Right-handed alpha
Helix 36	AD9	E	139	146	Right-handed alpha
Helix 37	AE1	E	223	230	Right-handed alpha
Helix 38	AE2	E	234	250	Right-handed alpha
Helix 39	AE3	E	280	285	Right-handed 310
Helix 40	AE4	E	295	315	Right-handed alpha
Helix 41	AE5	E	329	332	Right-handed 310
Helix 42	AE6	E	349	363	Right-handed alpha
Helix 43	AE7	E	365	370	Right-handed alpha
Helix 44	AE8	F	38	48	Right-handed alpha
Helix 45	AE9	F	52	56	Right-handed 310
Helix 46	AF1	F	63	73	Right-handed alpha
Helix 47	AF2	F	76	88	Right-handed alpha
Helix 48	AF3	F	107	115	Right-handed alpha
Helix 49	AF4	F	121	135	Right-handed alpha
Helix 50	AF5	F	139	146	Right-handed alpha
Helix 51	AF6	F	223	230	Right-handed alpha
Helix 52	AF7	F	234	249	Right-handed alpha
Helix 53	AF8	F	279	286	Right-handed 310
Helix 54	AF9	F	295	315	Right-handed alpha
Helix 55	AG1	F	329	332	Right-handed 310
Helix 56	AG2	F	349	361	Right-handed alpha
Helix 57	AG3	F	365	370	Right-handed alpha
Helix 58	AG4	G	38	48	Right-handed alpha
Helix 59	AG5	G	52	56	Right-handed 310
Helix 60	AG6	G	63	73	Right-handed alpha
Helix 61	AG7	G	78	88	Right-handed alpha
Helix 62	AG8	G	107	117	Right-handed alpha
Helix 63	AG9	G	121	135	Right-handed alpha
Helix 64	AH1	G	139	146	Right-handed alpha
Helix 65	AH2	G	223	230	Right-handed alpha
Helix 66	AH3	G	233	250	Right-handed alpha
Helix 67	AH4	G	280	285	Right-handed 310
Helix 68	AH5	G	295	315	Right-handed alpha
Helix 69	AH6	G	329	332	Right-handed 310
Helix 70	AH7	G	350	362	Right-handed alpha
Helix 71	AH8	G	365	370	Right-handed alpha
Helix 72	AH9	H	38	48	Right-handed alpha
Helix 73	AI1	H	52	56	Right-handed 310
Helix 74	AI2	H	63	73	Right-handed alpha
Helix 75	AI3	H	77	88	Right-handed alpha
Helix 76	AI4	H	107	117	Right-handed alpha
Helix 77	AI5	H	121	134	Right-handed alpha
Helix 78	AI6	H	139	146	Right-handed alpha
Helix 79	AI7	H	223	230	Right-handed alpha
Helix 80	AI8	H	233	251	Right-handed alpha
Helix 81	AI9	H	280	285	Right-handed 310
Helix 82	AJ1	H	295	315	Right-handed alpha
Helix 83	AJ2	H	329	332	Right-handed 310
Helix 84	AJ3	H	349	363	Right-handed alpha
Helix 85	AJ4	H	365	370	Right-handed alpha
Helix 86	AJ5	I	38	48	Right-handed alpha
Helix 87	AJ6	I	49	56	Right-handed alpha
Helix 88	AJ7	I	139	145	Right-handed alpha
Helix 89	AJ8	I	223	230	Right-handed alpha
Helix 90	AJ9	I	234	250	Right-handed alpha
Helix 91	AK1	I	280	286	Right-handed 310
Helix 92	AK2	I	295	313	Right-handed alpha
Helix 93	AK3	I	329	332	Right-handed 310
Helix 94	AK4	I	349	362	Right-handed alpha
Helix 95	AK5	J	103	110	Right-handed alpha
Helix 96	AK6	J	120	143	Right-handed alpha
Helix 97	AK7	J	155	163	Right-handed alpha
Helix 98	AK8	J	189	192	Right-handed 310
Helix 99	AK9	J	215	224	Right-handed alpha
Helix 100	AL1	J	255	263	Right-handed alpha
Helix 101	AL2	J	287	293	Right-handed alpha
Helix 102	AL3	J	369	373	Right-handed 310
Helix 103	AL4	J	377	381	Right-handed 310
Helix 104	AL5	J	419	427	Right-handed alpha
Helix 105	AL6	J	427	437	Right-handed alpha
Helix 106	AL7	J	450	465	Right-handed alpha
Helix 107	AL8	J	467	474	Right-handed alpha
Helix 108	AL9	J	478	483	Right-handed alpha
Helix 109	AM1	J	484	498	Right-handed alpha
Helix 110	AM2	J	502	514	Right-handed alpha
Helix 111	AM3	K	3	14	Right-handed alpha
Helix 112	AM4	K	16	25	Right-handed alpha
Helix 113	AM5	K	34	52	Right-handed alpha
Helix 114	AM6	K	57	71	Right-handed alpha
Helix 115	AM7	K	80	91	Right-handed alpha
Helix 116	AM8	K	96	107	Right-handed alpha
Helix 117	AM9	K	108	111	Right-handed 310
Helix 118	AN1	K	112	115	Right-handed 310
Helix 119	AN2	K	116	130	Right-handed alpha
Helix 120	AN3	K	136	146	Right-handed alpha
Helix 121	AN4	K	149	166	Right-handed alpha

There are 37 sheets in PDB entry 8YHA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	17	first strand
Strand 2	A	125	142	anti-parallel
Strand 3	A	77	85	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	125	142	parallel
Strand 3	A	67	74	anti-parallel
Strand 4	A	207	213	anti-parallel
Strand 5	A	242	253	anti-parallel
Strand 6	A	228	234	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	260	261	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	310	first strand
Strand 2	A	325	328	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	73	first strand
Strand 2	B	78	86	anti-parallel
Strand 3	B	2	9	anti-parallel
Strand 4	B	108	112	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	223	238	anti-parallel
Strand 3	B	190	201	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	223	238	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	263	267	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	173	first strand
Strand 2	D	213	222	anti-parallel
Strand 3	D	2	11	anti-parallel
Strand 4	D	268	274	anti-parallel
Strand 5	D	323	327	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	32	37	anti-parallel
Strand 3	D	176	177	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	61	first strand
Strand 2	D	101	103	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	166	167	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	28	first strand
Strand 2	E	33	37	anti-parallel
Strand 3	E	176	178	anti-parallel
Strand 4	E	214	222	anti-parallel
Strand 5	E	2	10	anti-parallel
Strand 6	E	268	273	anti-parallel
Strand 7	E	323	327	anti-parallel
Strand 8	E	345	347	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	61	first strand
Strand 2	E	101	104	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	190	first strand
Strand 2	E	205	210	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	32	37	anti-parallel
Strand 3	F	171	178	anti-parallel
Strand 4	F	202	222	anti-parallel
Strand 5	F	185	192	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	32	37	anti-parallel
Strand 3	F	171	178	anti-parallel
Strand 4	F	202	222	anti-parallel
Strand 5	F	2	14	anti-parallel
Strand 6	F	269	274	anti-parallel
Strand 7	F	323	327	anti-parallel
Strand 8	F	345	347	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	61	first strand
Strand 2	F	101	104	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	93	first strand
Strand 2	F	96	97	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	148	first strand
Strand 2	F	166	167	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	29	first strand
Strand 2	G	32	37	anti-parallel
Strand 3	G	176	178	anti-parallel
Strand 4	G	214	222	anti-parallel
Strand 5	G	171	173	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	29	first strand
Strand 2	G	32	37	anti-parallel
Strand 3	G	176	178	anti-parallel
Strand 4	G	214	222	anti-parallel
Strand 5	G	2	10	anti-parallel
Strand 6	G	268	274	anti-parallel
Strand 7	G	323	327	anti-parallel
Strand 8	G	345	347	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	61	first strand
Strand 2	G	101	104	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	190	first strand
Strand 2	G	205	210	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	29	first strand
Strand 2	H	32	37	anti-parallel
Strand 3	H	176	178	anti-parallel
Strand 4	H	214	222	anti-parallel
Strand 5	H	171	173	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	29	first strand
Strand 2	H	32	37	anti-parallel
Strand 3	H	176	178	anti-parallel
Strand 4	H	214	222	anti-parallel
Strand 5	H	2	10	anti-parallel
Strand 6	H	268	274	anti-parallel
Strand 7	H	323	327	anti-parallel
Strand 8	H	345	347	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	61	first strand
Strand 2	H	101	104	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	147	148	first strand
Strand 2	H	166	167	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	185	191	first strand
Strand 2	H	204	210	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	29	first strand
Strand 2	I	32	37	anti-parallel
Strand 3	I	176	178	anti-parallel
Strand 4	I	214	222	anti-parallel
Strand 5	I	171	173	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	29	first strand
Strand 2	I	32	37	anti-parallel
Strand 3	I	176	178	anti-parallel
Strand 4	I	214	222	anti-parallel
Strand 5	I	2	10	anti-parallel
Strand 6	I	268	274	anti-parallel
Strand 7	I	323	327	anti-parallel
Strand 8	I	346	347	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	184	191	first strand
Strand 2	I	204	211	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	99	102	first strand
Strand 2	J	90	94	anti-parallel
Strand 3	J	114	116	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	187	first strand
Strand 2	J	324	329	anti-parallel
Strand 3	J	297	301	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	305	310	first strand
Strand 2	J	317	321	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	388	390	first strand
Strand 2	J	410	412	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	393	397	first strand
Strand 2	J	402	407	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	74	75	first strand
Strand 2	K	134	135	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YHA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YHA