Analysis of interatomic Contacts of Structural Units in PDB entry:
8YHE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YHE entry

There are 14 chains in PDB entry 8YHE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	LEU 199
B	ALA 2	LYS 200
C	ALA 2	LYS 200
D	ALA 2	LYS 200
E	ALA 2	LEU 199
F	LYS 3	ALA 194
G	ILE 4	ILE 237
H	MET 1	LEU 609
I	LYS 434	LEU 609
J	LYS 3	LEU 199
K	LYS 140	LYS 608
L	LYS 433	LYS 608
M	G -8	G 37
N	C 9	U 38

There are 80 helices in PDB entry 8YHE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	67	Right-handed alpha
Helix 2	AA2	A	84	90	Right-handed alpha
Helix 3	AA3	A	157	170	Right-handed alpha
Helix 4	AA4	B	24	32	Right-handed alpha
Helix 5	AA5	B	51	67	Right-handed alpha
Helix 6	AA6	B	84	90	Right-handed alpha
Helix 7	AA7	B	109	113	Right-handed alpha
Helix 8	AA8	B	155	172	Right-handed alpha
Helix 9	AA9	C	24	32	Right-handed alpha
Helix 10	AB1	C	53	67	Right-handed alpha
Helix 11	AB2	C	84	91	Right-handed alpha
Helix 12	AB3	C	109	113	Right-handed alpha
Helix 13	AB4	C	156	172	Right-handed alpha
Helix 14	AB5	D	24	32	Right-handed alpha
Helix 15	AB6	D	51	67	Right-handed alpha
Helix 16	AB7	D	85	91	Right-handed alpha
Helix 17	AB8	D	156	172	Right-handed alpha
Helix 18	AB9	E	24	32	Right-handed alpha
Helix 19	AC1	E	51	67	Right-handed alpha
Helix 20	AC2	E	84	91	Right-handed alpha
Helix 21	AC3	E	109	113	Right-handed alpha
Helix 22	AC4	E	156	172	Right-handed alpha
Helix 23	AC5	E	176	180	Right-handed 310
Helix 24	AC6	F	24	32	Right-handed alpha
Helix 25	AC7	F	51	67	Right-handed alpha
Helix 26	AC8	F	84	91	Right-handed alpha
Helix 27	AC9	F	109	113	Right-handed alpha
Helix 28	AD1	F	157	172	Right-handed alpha
Helix 29	AD2	F	176	180	Right-handed 310
Helix 30	AD3	G	18	22	Right-handed 310
Helix 31	AD4	G	28	42	Right-handed alpha
Helix 32	AD5	G	47	53	Right-handed alpha
Helix 33	AD6	G	124	126	Right-handed 310
Helix 34	AD7	G	127	142	Right-handed alpha
Helix 35	AD8	H	43	53	Right-handed alpha
Helix 36	AD9	H	64	68	Right-handed 310
Helix 37	AE1	H	70	77	Right-handed alpha
Helix 38	AE2	H	86	107	Right-handed alpha
Helix 39	AE3	H	114	122	Right-handed alpha
Helix 40	AE4	H	208	219	Right-handed alpha
Helix 41	AE5	H	233	245	Right-handed alpha
Helix 42	AE6	H	256	268	Right-handed alpha
Helix 43	AE7	H	269	272	Right-handed 310
Helix 44	AE8	H	273	277	Right-handed 310
Helix 45	AE9	H	295	304	Right-handed alpha
Helix 46	AF1	H	323	331	Right-handed alpha
Helix 47	AF2	H	375	384	Right-handed alpha
Helix 48	AF3	H	399	412	Right-handed alpha
Helix 49	AF4	H	470	479	Right-handed alpha
Helix 50	AF5	H	509	523	Right-handed alpha
Helix 51	AF6	H	527	541	Right-handed alpha
Helix 52	AF7	H	541	554	Right-handed alpha
Helix 53	AF8	H	572	593	Right-handed alpha
Helix 54	AF9	H	596	603	Right-handed alpha
Helix 55	AG1	I	470	485	Right-handed alpha
Helix 56	AG2	I	509	523	Right-handed alpha
Helix 57	AG3	I	527	540	Right-handed alpha
Helix 58	AG4	I	542	554	Right-handed alpha
Helix 59	AG5	I	572	592	Right-handed alpha
Helix 60	AG6	I	594	606	Right-handed alpha
Helix 61	AG7	J	24	29	Right-handed alpha
Helix 62	AG8	J	51	66	Right-handed alpha
Helix 63	AG9	J	84	91	Right-handed alpha
Helix 64	AH1	J	109	113	Right-handed alpha
Helix 65	AH2	J	156	172	Right-handed alpha
Helix 66	AH3	J	176	180	Right-handed 310
Helix 67	AH4	K	379	385	Right-handed alpha
Helix 68	AH5	K	401	413	Right-handed alpha
Helix 69	AH6	K	470	487	Right-handed alpha
Helix 70	AH7	K	509	523	Right-handed alpha
Helix 71	AH8	K	527	540	Right-handed alpha
Helix 72	AH9	K	541	553	Right-handed alpha
Helix 73	AI1	K	572	590	Right-handed alpha
Helix 74	AI2	K	594	603	Right-handed alpha
Helix 75	AI3	L	470	486	Right-handed alpha
Helix 76	AI4	L	511	523	Right-handed alpha
Helix 77	AI5	L	527	536	Right-handed alpha
Helix 78	AI6	L	546	554	Right-handed alpha
Helix 79	AI7	L	573	593	Right-handed alpha
Helix 80	AI8	L	596	604	Right-handed alpha

There are 34 sheets in PDB entry 8YHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	144	150	anti-parallel
Strand 3	A	4	12	anti-parallel
Strand 4	A	191	194	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	104	106	anti-parallel
Strand 3	B	143	151	anti-parallel
Strand 4	B	99	101	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	104	106	anti-parallel
Strand 3	B	143	151	anti-parallel
Strand 4	B	4	14	anti-parallel
Strand 5	B	184	194	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	119	first strand
Strand 2	B	133	138	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	143	150	anti-parallel
Strand 3	C	105	106	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	143	150	anti-parallel
Strand 3	C	4	14	anti-parallel
Strand 4	C	184	194	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	122	first strand
Strand 2	C	129	138	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	104	106	anti-parallel
Strand 3	D	143	150	anti-parallel
Strand 4	D	99	101	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	104	106	anti-parallel
Strand 3	D	143	150	anti-parallel
Strand 4	D	4	14	anti-parallel
Strand 5	D	184	194	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	122	first strand
Strand 2	D	129	138	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	143	151	anti-parallel
Strand 3	E	105	106	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	143	151	anti-parallel
Strand 3	E	4	14	anti-parallel
Strand 4	E	184	194	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	122	first strand
Strand 2	E	129	138	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	143	151	anti-parallel
Strand 3	F	105	106	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	143	151	anti-parallel
Strand 3	F	5	14	anti-parallel
Strand 4	F	184	193	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	122	first strand
Strand 2	F	129	138	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	117	first strand
Strand 2	G	5	10	anti-parallel
Strand 3	G	155	162	anti-parallel
Strand 4	G	143	144	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	84	first strand
Strand 2	G	91	92	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	102	first strand
Strand 2	G	105	110	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	189	195	first strand
Strand 2	G	200	206	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	H	14	18	anti-parallel
Strand 3	H	25	30	anti-parallel
Strand 4	H	55	59	parallel
Strand 5	H	80	84	parallel
Strand 6	H	125	126	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	139	145	anti-parallel
Strand 3	H	153	158	anti-parallel
Strand 4	H	163	166	anti-parallel
Strand 5	H	191	193	parallel
Strand 6	H	392	394	parallel
Strand 7	H	416	418	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	225	228	first strand
Strand 2	H	310	313	parallel
Strand 3	H	251	253	parallel
Strand 4	H	290	292	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	445	446	first strand
Strand 2	H	451	452	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	454	456	first strand
Strand 2	K	456	461	anti-parallel
Strand 3	K	465	469	anti-parallel
Strand 4	K	435	438	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	458	459	first strand
Strand 2	H	468	469	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	467	469	first strand
Strand 2	I	457	460	anti-parallel
Strand 3	L	450	455	anti-parallel
Strand 4	L	445	447	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	99	101	first strand
Strand 2	J	143	150	anti-parallel
Strand 3	J	105	106	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	99	101	first strand
Strand 2	J	143	150	anti-parallel
Strand 3	J	4	14	anti-parallel
Strand 4	J	184	194	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	122	first strand
Strand 2	J	129	138	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	141	142	first strand
Strand 2	K	156	157	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	164	166	first strand
Strand 2	K	191	193	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	392	394	first strand
Strand 2	K	416	418	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	434	437	first strand
Strand 2	L	465	469	parallel
Strand 3	L	458	460	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YHE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YHE