Analysis of interatomic Contacts of Structural Units in PDB entry:
8YHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YHH entry

There are 2 chains in PDB entry 8YHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 17GLU 364
B
 LYS 17GLU 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8YHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 35Right-handed alpha
Helix 2
AA2
A
77 95Right-handed alpha
Helix 3
AA3
A
110 116Right-handed alpha
Helix 4
AA4
A
134 150Right-handed alpha
Helix 5
AA5
A
206 208Right-handed 310
Helix 6
AA6
A
209 229Right-handed alpha
Helix 7
AA7
A
231 235Right-handed 310
Helix 8
AA8
A
268 272Right-handed 310
Helix 9
AA9
A
290 305Right-handed alpha
Helix 10
AB1
A
310 313Right-handed 310
Helix 11
AB2
A
314 320Right-handed alpha
Helix 12
AB3
A
321 324Right-handed 310
Helix 13
AB4
A
339 341Right-handed 310
Helix 14
AB5
A
342 357Right-handed alpha
Helix 15
AB6
B
29 35Right-handed alpha
Helix 16
AB7
B
59 61Right-handed 310
Helix 17
AB8
B
77 95Right-handed alpha
Helix 18
AB9
B
110 116Right-handed alpha
Helix 19
AC1
B
134 150Right-handed alpha
Helix 20
AC2
B
209 229Right-handed alpha
Helix 21
AC3
B
231 235Right-handed 310
Helix 22
AC4
B
290 305Right-handed alpha
Helix 23
AC5
B
310 313Right-handed 310
Helix 24
AC6
B
314 320Right-handed alpha
Helix 25
AC7
B
321 324Right-handed 310
Helix 26
AC8
B
339 341Right-handed 310
Helix 27
AC9
B
342 357Right-handed alpha
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There are 8 sheets in PDB entry 8YHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
19 25parallel
Strand 3
A
330 336parallel
Strand 4
A
98 105parallel
Strand 5
A
254 265parallel
Strand 6
A
236 248anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
167 170anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
19 25parallel
Strand 3
A
330 336parallel
Strand 4
A
98 105parallel
Strand 5
A
254 265parallel
Strand 6
A
236 248anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
202 204anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
63 67anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 187first strand
Strand 2
A
190 197anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
19 25parallel
Strand 3
B
330 336parallel
Strand 4
B
98 105parallel
Strand 5
B
256 265parallel
Strand 6
B
236 246anti-parallel
Strand 7
B
153 164anti-parallel
Strand 8
B
167 170anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
19 25parallel
Strand 3
B
330 336parallel
Strand 4
B
98 105parallel
Strand 5
B
256 265parallel
Strand 6
B
236 246anti-parallel
Strand 7
B
153 164anti-parallel
Strand 8
B
202 204anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
49 53anti-parallel
Strand 3
B
63 67anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 187first strand
Strand 2
B
190 197anti-parallel
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