Analysis of interatomic Contacts of Structural Units in PDB entry:
8YHK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YHK entry

There is 1 chain in PDB entry 8YHK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 298ARG 591
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8YHK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
300 312Right-handed alpha
Helix 2
AA2
A
316 320Right-handed 310
Helix 3
AA3
A
359 363Right-handed 310
Helix 4
AA4
A
364 369Right-handed alpha
Helix 5
AA5
A
403 410Right-handed alpha
Helix 6
AA6
A
413 435Right-handed alpha
Helix 7
AA7
A
442 444Right-handed 310
Helix 8
AA8
A
458 460Right-handed 310
Helix 9
AA9
A
478 482Right-handed 310
Helix 10
AB1
A
483 488Right-handed alpha
Helix 11
AB2
A
495 511Right-handed alpha
Helix 12
AB3
A
519 530Right-handed alpha
Helix 13
AB4
A
542 553Right-handed alpha
Helix 14
AB5
A
562 568Right-handed alpha
Helix 15
AB6
A
569 574Right-handed 310
Helix 16
AB7
A
577 589Right-handed 310
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There are 3 sheets in PDB entry 8YHK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
346 353anti-parallel
Strand 3
A
390 396anti-parallel
Strand 4
A
381 387anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
A
446 448anti-parallel
Strand 3
A
454 456anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 438first strand
Strand 2
A
462 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il