Analysis of interatomic Contacts of Structural Units in PDB entry:
8YHT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YHT entry

There are 2 chains in PDB entry 8YHT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 27CYS 696
B
 SER 1LEU 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8YHT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 73Right-handed 310
Helix 2
AA2
A
91 96Right-handed 310
Helix 3
AA3
A
188 195Right-handed 310
Helix 4
AA4
A
237 245Right-handed alpha
Helix 5
AA5
A
269 273Right-handed 310
Helix 6
AA6
A
314 319Right-handed 310
Helix 7
AA7
A
397 405Right-handed 310
Helix 8
AA8
A
542 546Right-handed 310
Helix 9
AA9
A
655 662Right-handed alpha
Helix 10
AB1
A
680 684Right-handed 310
Helix 11
AB2
A
687 691Right-handed 310
Helix 12
AB3
B
2 21Right-handed alpha
Helix 13
AB4
B
22 40Right-handed alpha
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There are 6 sheets in PDB entry 8YHT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
35 36anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
103 105parallel
Strand 3
A
127 129parallel
Strand 4
A
151 154parallel
Strand 5
A
175 178parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
310 313parallel
Strand 3
A
344 346parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
421 422parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
435 436parallel
Strand 3
A
460 462parallel
Strand 4
A
484 488parallel
Strand 5
A
510 514parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 446first strand
Strand 2
A
468 470parallel
Strand 3
A
491 493parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il