Analysis of interatomic Contacts of Structural Units in PDB entry:
8YHW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YHW entry

There are 4 chains in PDB entry 8YHW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 334	PRO 675
B	GLU 334	PRO 675
C	GLU 334	PRO 675
D	GLU 334	PRO 675

There are 56 helices in PDB entry 8YHW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	334	342	Right-handed alpha
Helix 2	AA2	A	349	365	Right-handed alpha
Helix 3	AA3	A	434	437	Right-handed 310
Helix 4	AA4	A	438	443	Right-handed alpha
Helix 5	AA5	A	476	485	Right-handed alpha
Helix 6	AA6	A	488	509	Right-handed alpha
Helix 7	AA7	A	517	519	Right-handed 310
Helix 8	AA8	A	559	563	Right-handed 310
Helix 9	AA9	A	564	569	Right-handed alpha
Helix 10	AB1	A	575	592	Right-handed alpha
Helix 11	AB2	A	604	611	Right-handed alpha
Helix 12	AB3	A	613	618	Right-handed 310
Helix 13	AB4	A	623	634	Right-handed alpha
Helix 14	AB5	A	643	658	Right-handed alpha
Helix 15	AB6	B	335	342	Right-handed alpha
Helix 16	AB7	B	349	365	Right-handed alpha
Helix 17	AB8	B	434	437	Right-handed 310
Helix 18	AB9	B	438	443	Right-handed alpha
Helix 19	AC1	B	476	485	Right-handed alpha
Helix 20	AC2	B	488	509	Right-handed alpha
Helix 21	AC3	B	517	519	Right-handed 310
Helix 22	AC4	B	559	563	Right-handed 310
Helix 23	AC5	B	564	569	Right-handed alpha
Helix 24	AC6	B	575	592	Right-handed alpha
Helix 25	AC7	B	604	611	Right-handed alpha
Helix 26	AC8	B	613	618	Right-handed 310
Helix 27	AC9	B	623	634	Right-handed alpha
Helix 28	AD1	B	643	658	Right-handed alpha
Helix 29	AD2	C	335	342	Right-handed alpha
Helix 30	AD3	C	349	365	Right-handed alpha
Helix 31	AD4	C	434	437	Right-handed 310
Helix 32	AD5	C	438	443	Right-handed alpha
Helix 33	AD6	C	476	485	Right-handed alpha
Helix 34	AD7	C	488	509	Right-handed alpha
Helix 35	AD8	C	517	519	Right-handed 310
Helix 36	AD9	C	559	563	Right-handed 310
Helix 37	AE1	C	564	569	Right-handed alpha
Helix 38	AE2	C	575	592	Right-handed alpha
Helix 39	AE3	C	604	611	Right-handed alpha
Helix 40	AE4	C	613	618	Right-handed 310
Helix 41	AE5	C	623	634	Right-handed alpha
Helix 42	AE6	C	643	658	Right-handed alpha
Helix 43	AE7	D	335	342	Right-handed alpha
Helix 44	AE8	D	349	365	Right-handed alpha
Helix 45	AE9	D	434	437	Right-handed 310
Helix 46	AF1	D	438	443	Right-handed alpha
Helix 47	AF2	D	476	485	Right-handed alpha
Helix 48	AF3	D	488	509	Right-handed alpha
Helix 49	AF4	D	517	519	Right-handed 310
Helix 50	AF5	D	559	563	Right-handed 310
Helix 51	AF6	D	564	569	Right-handed alpha
Helix 52	AF7	D	575	592	Right-handed alpha
Helix 53	AF8	D	604	611	Right-handed alpha
Helix 54	AF9	D	613	618	Right-handed 310
Helix 55	AG1	D	623	634	Right-handed alpha
Helix 56	AG2	D	643	658	Right-handed alpha

There are 12 sheets in PDB entry 8YHW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	377	381	parallel
Strand 3	A	455	461	anti-parallel
Strand 4	A	464	469	anti-parallel
Strand 5	A	425	432	anti-parallel
Strand 6	A	413	419	anti-parallel
Strand 7	A	399	408	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	512	first strand
Strand 2	A	539	540	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	523	first strand
Strand 2	A	530	532	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	347	first strand
Strand 2	B	377	381	parallel
Strand 3	B	455	461	anti-parallel
Strand 4	B	464	469	anti-parallel
Strand 5	B	425	432	anti-parallel
Strand 6	B	413	419	anti-parallel
Strand 7	B	399	408	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	512	first strand
Strand 2	B	539	540	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	523	first strand
Strand 2	B	530	532	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	347	first strand
Strand 2	C	377	381	parallel
Strand 3	C	455	461	anti-parallel
Strand 4	C	464	469	anti-parallel
Strand 5	C	425	432	anti-parallel
Strand 6	C	413	419	anti-parallel
Strand 7	C	399	408	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	512	first strand
Strand 2	C	539	540	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	523	first strand
Strand 2	C	530	532	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	347	first strand
Strand 2	D	377	381	parallel
Strand 3	D	455	461	anti-parallel
Strand 4	D	464	469	anti-parallel
Strand 5	D	425	432	anti-parallel
Strand 6	D	413	419	anti-parallel
Strand 7	D	399	408	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	512	first strand
Strand 2	D	539	540	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	523	first strand
Strand 2	D	530	532	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YHW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YHW