Analysis of interatomic Contacts of Structural Units in PDB entry:
8YI2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YI2 entry

There are 4 chains in PDB entry 8YI2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ASN 439
A	MET 1	GLN 435
C	MET 1	ASN 439
D	MET 1	GLU 29

There are 60 helices in PDB entry 8YI2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	39	43	Right-handed 310
Helix 2	AA2	B	56	61	Right-handed 310
Helix 3	AA3	B	62	78	Right-handed alpha
Helix 4	AA4	B	79	83	Right-handed 310
Helix 5	AA5	B	112	117	Right-handed 310
Helix 6	AA6	B	126	131	Right-handed alpha
Helix 7	AA7	B	170	186	Right-handed alpha
Helix 8	AA8	B	198	203	Right-handed 310
Helix 9	AA9	B	234	243	Right-handed alpha
Helix 10	AB1	B	245	249	Right-handed 310
Helix 11	AB2	B	252	270	Right-handed alpha
Helix 12	AB3	B	313	319	Right-handed alpha
Helix 13	AB4	B	320	337	Right-handed alpha
Helix 14	AB5	B	342	347	Right-handed alpha
Helix 15	AB6	B	419	439	Right-handed alpha
Helix 16	AB7	A	34	39	Right-handed alpha
Helix 17	AB8	A	40	43	Right-handed 310
Helix 18	AB9	A	56	60	Right-handed 310
Helix 19	AC1	A	62	78	Right-handed alpha
Helix 20	AC2	A	79	83	Right-handed 310
Helix 21	AC3	A	112	117	Right-handed 310
Helix 22	AC4	A	126	131	Right-handed alpha
Helix 23	AC5	A	170	186	Right-handed alpha
Helix 24	AC6	A	198	203	Right-handed 310
Helix 25	AC7	A	234	242	Right-handed alpha
Helix 26	AC8	A	246	251	Right-handed 310
Helix 27	AC9	A	252	270	Right-handed alpha
Helix 28	AD1	A	313	319	Right-handed alpha
Helix 29	AD2	A	320	336	Right-handed alpha
Helix 30	AD3	A	342	347	Right-handed alpha
Helix 31	AD4	A	419	435	Right-handed alpha
Helix 32	AD5	C	39	43	Right-handed 310
Helix 33	AD6	C	56	60	Right-handed 310
Helix 34	AD7	C	62	78	Right-handed alpha
Helix 35	AD8	C	79	83	Right-handed 310
Helix 36	AD9	C	112	117	Right-handed alpha
Helix 37	AE1	C	126	131	Right-handed alpha
Helix 38	AE2	C	170	186	Right-handed alpha
Helix 39	AE3	C	198	203	Right-handed 310
Helix 40	AE4	C	234	243	Right-handed alpha
Helix 41	AE5	C	244	249	Right-handed 310
Helix 42	AE6	C	252	270	Right-handed alpha
Helix 43	AE7	C	313	319	Right-handed alpha
Helix 44	AE8	C	320	335	Right-handed alpha
Helix 45	AE9	C	342	347	Right-handed alpha
Helix 46	AF1	C	418	439	Right-handed alpha
Helix 47	AF2	D	39	43	Right-handed 310
Helix 48	AF3	D	63	78	Right-handed alpha
Helix 49	AF4	D	79	83	Right-handed 310
Helix 50	AF5	D	112	117	Right-handed 310
Helix 51	AF6	D	126	131	Right-handed alpha
Helix 52	AF7	D	170	186	Right-handed alpha
Helix 53	AF8	D	198	203	Right-handed 310
Helix 54	AF9	D	234	243	Right-handed alpha
Helix 55	AG1	D	245	249	Right-handed 310
Helix 56	AG2	D	252	270	Right-handed alpha
Helix 57	AG3	D	313	319	Right-handed alpha
Helix 58	AG4	D	320	336	Right-handed alpha
Helix 59	AG5	D	342	347	Right-handed alpha
Helix 60	AG6	D	418	438	Right-handed alpha

There are 26 sheets in PDB entry 8YI2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	225	233	anti-parallel
Strand 3	B	410	418	anti-parallel
Strand 4	B	395	401	anti-parallel
Strand 5	B	359	363	parallel
Strand 6	B	276	280	parallel
Strand 7	B	308	312	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	102	109	anti-parallel
Strand 3	B	18	20	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	102	109	anti-parallel
Strand 3	B	146	153	parallel
Strand 4	B	158	165	anti-parallel
Strand 5	B	45	52	anti-parallel
Strand 6	B	381	383	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	93	97	anti-parallel
Strand 3	B	84	87	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	304	305	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	340	341	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	225	233	anti-parallel
Strand 3	A	409	418	anti-parallel
Strand 4	A	395	403	anti-parallel
Strand 5	A	359	363	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	102	109	anti-parallel
Strand 3	A	146	153	parallel
Strand 4	A	158	165	anti-parallel
Strand 5	A	45	52	anti-parallel
Strand 6	A	381	382	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	102	109	anti-parallel
Strand 3	A	146	153	parallel
Strand 4	A	158	165	anti-parallel
Strand 5	A	45	52	anti-parallel
Strand 6	A	386	387	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	93	97	anti-parallel
Strand 3	A	84	87	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	280	first strand
Strand 2	A	308	312	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	304	305	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	340	341	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	230	233	anti-parallel
Strand 3	C	409	413	anti-parallel
Strand 4	C	395	403	anti-parallel
Strand 5	C	358	363	parallel
Strand 6	C	276	280	parallel
Strand 7	C	308	312	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	102	109	anti-parallel
Strand 3	C	18	20	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	102	109	anti-parallel
Strand 3	C	146	153	parallel
Strand 4	C	158	165	anti-parallel
Strand 5	C	45	52	anti-parallel
Strand 6	C	381	383	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	93	97	anti-parallel
Strand 3	C	84	87	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	416	417	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	304	305	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	291	first strand
Strand 2	C	340	341	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	102	109	anti-parallel
Strand 3	D	18	20	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	102	109	anti-parallel
Strand 3	D	146	153	parallel
Strand 4	D	158	165	anti-parallel
Strand 5	D	45	52	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	94	97	anti-parallel
Strand 3	D	84	86	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	416	417	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	233	first strand
Strand 2	D	409	413	anti-parallel
Strand 3	D	395	403	anti-parallel
Strand 4	D	358	363	parallel
Strand 5	D	276	280	parallel
Strand 6	D	308	312	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	284	first strand
Strand 2	D	304	305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YI2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YI2