Analysis of interatomic Contacts of Structural Units in PDB entry:
8YI6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YI6 entry

There are 2 chains in PDB entry 8YI6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 22TYR 479
B
 GLY 22TYR 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8YI6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 40Right-handed 310
Helix 2
AA2
A
42 60Right-handed 310
Helix 3
AA3
A
74 84Right-handed alpha
Helix 4
AA4
A
89 99Right-handed alpha
Helix 5
AA5
A
112 120Right-handed alpha
Helix 6
AA6
A
120 134Right-handed alpha
Helix 7
AA7
A
145 156Right-handed alpha
Helix 8
AA8
A
163 171Right-handed alpha
Helix 9
AA9
A
172 184Right-handed alpha
Helix 10
AB1
A
197 206Right-handed alpha
Helix 11
AB2
A
238 244Right-handed alpha
Helix 12
AB3
A
246 249Right-handed 310
Helix 13
AB4
A
257 268Right-handed alpha
Helix 14
AB5
A
320 340Right-handed alpha
Helix 15
AB6
A
367 381Right-handed alpha
Helix 16
AB7
A
407 412Right-handed alpha
Helix 17
AB8
A
415 426Right-handed alpha
Helix 18
AB9
A
444 450Right-handed alpha
Helix 19
AC1
A
460 476Right-handed alpha
Helix 20
AC2
B
36 40Right-handed 310
Helix 21
AC3
B
41 60Right-handed 310
Helix 22
AC4
B
74 84Right-handed alpha
Helix 23
AC5
B
89 99Right-handed alpha
Helix 24
AC6
B
112 120Right-handed alpha
Helix 25
AC7
B
120 134Right-handed alpha
Helix 26
AC8
B
145 156Right-handed alpha
Helix 27
AC9
B
163 171Right-handed alpha
Helix 28
AD1
B
172 184Right-handed alpha
Helix 29
AD2
B
197 207Right-handed alpha
Helix 30
AD3
B
238 244Right-handed alpha
Helix 31
AD4
B
246 249Right-handed 310
Helix 32
AD5
B
257 268Right-handed alpha
Helix 33
AD6
B
320 340Right-handed alpha
Helix 34
AD7
B
367 381Right-handed alpha
Helix 35
AD8
B
407 412Right-handed alpha
Helix 36
AD9
B
415 426Right-handed alpha
Helix 37
AE1
B
444 450Right-handed alpha
Helix 38
AE2
B
460 476Right-handed alpha
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There are 6 sheets in PDB entry 8YI6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
63 68parallel
Strand 3
A
23 28parallel
Strand 4
A
136 141parallel
Strand 5
A
158 159parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
234 237anti-parallel
Strand 3
A
217 222anti-parallel
Strand 4
A
270 274anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 364first strand
Strand 2
A
343 351anti-parallel
Strand 3
A
282 289anti-parallel
Strand 4
A
295 303anti-parallel
Strand 5
A
312 315anti-parallel
Strand 6
A
399 406anti-parallel
Strand 7
A
451 458anti-parallel
Strand 8
A
437 441anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 103first strand
Strand 2
B
63 68parallel
Strand 3
B
23 27parallel
Strand 4
B
137 140parallel
Strand 5
B
158 159parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 253first strand
Strand 2
B
234 237anti-parallel
Strand 3
B
217 222anti-parallel
Strand 4
B
270 274anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 364first strand
Strand 2
B
343 351anti-parallel
Strand 3
B
284 289anti-parallel
Strand 4
B
295 303anti-parallel
Strand 5
B
312 315anti-parallel
Strand 6
B
399 406anti-parallel
Strand 7
B
451 458anti-parallel
Strand 8
B
437 441anti-parallel
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