Analysis of interatomic Contacts of Structural Units in PDB entry:
8YI9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YI9 entry

There are 6 chains in PDB entry 8YI9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	GLY 309
B	PRO 2	GLY 309
C	PRO 2	GLY 309
D	PRO 2	GLY 309
E	PRO 2	GLY 309
F	PRO 2	GLY 309

There are 72 helices in PDB entry 8YI9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	23	Right-handed alpha
Helix 2	AA2	A	62	80	Right-handed alpha
Helix 3	AA3	A	110	123	Right-handed alpha
Helix 4	AA4	A	134	141	Right-handed 310
Helix 5	AA5	A	150	162	Right-handed alpha
Helix 6	AA6	A	164	168	Right-handed 310
Helix 7	AA7	A	174	176	Right-handed 310
Helix 8	AA8	A	177	189	Right-handed alpha
Helix 9	AA9	A	232	243	Right-handed alpha
Helix 10	AB1	A	260	266	Right-handed alpha
Helix 11	AB2	A	280	286	Right-handed alpha
Helix 12	AB3	A	295	309	Right-handed alpha
Helix 13	AB4	B	12	23	Right-handed alpha
Helix 14	AB5	B	62	80	Right-handed alpha
Helix 15	AB6	B	110	123	Right-handed alpha
Helix 16	AB7	B	134	141	Right-handed 310
Helix 17	AB8	B	150	162	Right-handed alpha
Helix 18	AB9	B	164	168	Right-handed 310
Helix 19	AC1	B	174	176	Right-handed 310
Helix 20	AC2	B	177	189	Right-handed alpha
Helix 21	AC3	B	232	243	Right-handed alpha
Helix 22	AC4	B	260	266	Right-handed alpha
Helix 23	AC5	B	280	286	Right-handed alpha
Helix 24	AC6	B	295	309	Right-handed alpha
Helix 25	AC7	C	12	23	Right-handed alpha
Helix 26	AC8	C	62	80	Right-handed alpha
Helix 27	AC9	C	110	123	Right-handed alpha
Helix 28	AD1	C	134	141	Right-handed 310
Helix 29	AD2	C	150	162	Right-handed alpha
Helix 30	AD3	C	164	168	Right-handed 310
Helix 31	AD4	C	174	176	Right-handed 310
Helix 32	AD5	C	177	188	Right-handed alpha
Helix 33	AD6	C	232	243	Right-handed alpha
Helix 34	AD7	C	260	266	Right-handed alpha
Helix 35	AD8	C	280	286	Right-handed alpha
Helix 36	AD9	C	295	309	Right-handed alpha
Helix 37	AE1	D	12	23	Right-handed alpha
Helix 38	AE2	D	62	80	Right-handed alpha
Helix 39	AE3	D	110	123	Right-handed alpha
Helix 40	AE4	D	134	141	Right-handed 310
Helix 41	AE5	D	150	162	Right-handed alpha
Helix 42	AE6	D	164	168	Right-handed 310
Helix 43	AE7	D	174	176	Right-handed 310
Helix 44	AE8	D	177	189	Right-handed alpha
Helix 45	AE9	D	232	243	Right-handed alpha
Helix 46	AF1	D	260	266	Right-handed alpha
Helix 47	AF2	D	280	286	Right-handed alpha
Helix 48	AF3	D	295	309	Right-handed alpha
Helix 49	AF4	E	12	23	Right-handed alpha
Helix 50	AF5	E	62	80	Right-handed alpha
Helix 51	AF6	E	110	123	Right-handed alpha
Helix 52	AF7	E	134	141	Right-handed 310
Helix 53	AF8	E	150	162	Right-handed alpha
Helix 54	AF9	E	164	166	Right-handed 310
Helix 55	AG1	E	174	176	Right-handed 310
Helix 56	AG2	E	177	189	Right-handed alpha
Helix 57	AG3	E	232	243	Right-handed alpha
Helix 58	AG4	E	260	266	Right-handed alpha
Helix 59	AG5	E	280	286	Right-handed alpha
Helix 60	AG6	E	295	309	Right-handed alpha
Helix 61	AG7	F	12	23	Right-handed alpha
Helix 62	AG8	F	62	80	Right-handed alpha
Helix 63	AG9	F	110	123	Right-handed alpha
Helix 64	AH1	F	134	141	Right-handed 310
Helix 65	AH2	F	150	162	Right-handed alpha
Helix 66	AH3	F	164	168	Right-handed 310
Helix 67	AH4	F	174	176	Right-handed 310
Helix 68	AH5	F	177	188	Right-handed alpha
Helix 69	AH6	F	232	243	Right-handed alpha
Helix 70	AH7	F	260	266	Right-handed alpha
Helix 71	AH8	F	280	286	Right-handed alpha
Helix 72	AH9	F	295	309	Right-handed alpha

There are 18 sheets in PDB entry 8YI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	52	56	parallel
Strand 3	A	84	89	parallel
Strand 4	A	126	130	parallel
Strand 5	A	145	148	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	40	44	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	169	172	parallel
Strand 4	A	218	226	parallel
Strand 5	A	246	254	parallel
Strand 6	A	269	275	parallel
Strand 7	A	290	293	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	52	56	parallel
Strand 3	B	84	89	parallel
Strand 4	B	126	130	parallel
Strand 5	B	145	148	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	40	44	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	192	196	anti-parallel
Strand 3	B	169	172	parallel
Strand 4	B	218	226	parallel
Strand 5	B	246	254	parallel
Strand 6	B	269	275	parallel
Strand 7	B	290	293	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	52	56	parallel
Strand 3	C	84	89	parallel
Strand 4	C	126	130	parallel
Strand 5	C	145	148	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	34	first strand
Strand 2	C	40	44	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	211	first strand
Strand 2	C	192	196	anti-parallel
Strand 3	C	169	172	parallel
Strand 4	C	218	226	parallel
Strand 5	C	246	254	parallel
Strand 6	C	269	275	parallel
Strand 7	C	290	293	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	52	56	parallel
Strand 3	D	84	89	parallel
Strand 4	D	126	130	parallel
Strand 5	D	145	148	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	40	44	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	211	first strand
Strand 2	D	192	196	anti-parallel
Strand 3	D	169	172	parallel
Strand 4	D	218	226	parallel
Strand 5	D	246	254	parallel
Strand 6	D	269	275	parallel
Strand 7	D	290	293	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	52	56	parallel
Strand 3	E	84	89	parallel
Strand 4	E	126	130	parallel
Strand 5	E	145	148	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	34	first strand
Strand 2	E	40	44	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	211	first strand
Strand 2	E	192	196	anti-parallel
Strand 3	E	168	172	parallel
Strand 4	E	218	226	parallel
Strand 5	E	246	254	parallel
Strand 6	E	269	275	parallel
Strand 7	E	290	293	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	8	first strand
Strand 2	F	52	56	parallel
Strand 3	F	84	89	parallel
Strand 4	F	126	130	parallel
Strand 5	F	145	148	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	34	first strand
Strand 2	F	40	44	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	211	first strand
Strand 2	F	192	196	anti-parallel
Strand 3	F	169	172	parallel
Strand 4	F	218	226	parallel
Strand 5	F	246	254	parallel
Strand 6	F	269	275	parallel
Strand 7	F	290	293	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YI9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YI9