Analysis of interatomic Contacts of Structural Units in PDB entry:
8YIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YIE entry

There are 2 chains in PDB entry 8YIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 17ALA 566
B
 ALA 17LEU 561
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 8YIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 22Right-handed 310
Helix 2
AA2
A
29 33Right-handed 310
Helix 3
AA3
A
43 58Right-handed alpha
Helix 4
AA4
A
91 105Right-handed alpha
Helix 5
AA5
A
122 131Right-handed alpha
Helix 6
AA6
A
135 140Right-handed alpha
Helix 7
AA7
A
196 213Right-handed alpha
Helix 8
AA8
A
253 267Right-handed alpha
Helix 9
AA9
A
283 291Right-handed alpha
Helix 10
AB1
A
301 306Right-handed alpha
Helix 11
AB2
A
310 325Right-handed alpha
Helix 12
AB3
A
340 347Right-handed alpha
Helix 13
AB4
A
371 386Right-handed alpha
Helix 14
AB5
A
397 401Right-handed 310
Helix 15
AB6
A
409 413Right-handed 310
Helix 16
AB7
A
415 421Right-handed alpha
Helix 17
AB8
A
428 432Right-handed 310
Helix 18
AB9
A
459 465Right-handed 310
Helix 19
AC1
A
466 472Right-handed alpha
Helix 20
AC2
A
476 492Right-handed alpha
Helix 21
AC3
A
530 534Right-handed 310
Helix 22
AC4
B
19 22Right-handed 310
Helix 23
AC5
B
29 33Right-handed 310
Helix 24
AC6
B
43 58Right-handed alpha
Helix 25
AC7
B
91 105Right-handed alpha
Helix 26
AC8
B
122 131Right-handed alpha
Helix 27
AC9
B
135 140Right-handed alpha
Helix 28
AD1
B
196 213Right-handed alpha
Helix 29
AD2
B
240 244Right-handed 310
Helix 30
AD3
B
253 267Right-handed alpha
Helix 31
AD4
B
283 290Right-handed alpha
Helix 32
AD5
B
301 306Right-handed alpha
Helix 33
AD6
B
310 325Right-handed alpha
Helix 34
AD7
B
340 346Right-handed alpha
Helix 35
AD8
B
371 386Right-handed alpha
Helix 36
AD9
B
397 401Right-handed 310
Helix 37
AE1
B
409 413Right-handed 310
Helix 38
AE2
B
415 421Right-handed alpha
Helix 39
AE3
B
428 432Right-handed 310
Helix 40
AE4
B
450 454Right-handed 310
Helix 41
AE5
B
461 465Right-handed 310
Helix 42
AE6
B
466 472Right-handed alpha
Helix 43
AE7
B
476 492Right-handed alpha
Helix 44
AE8
B
530 534Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 8YIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
274 277parallel
Strand 3
A
217 220parallel
Strand 4
A
108 113parallel
Strand 5
A
61 64parallel
Strand 6
A
24 28parallel
Strand 7
A
391 395parallel
Strand 8
A
330 332parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
177 182anti-parallel
Strand 3
A
167 171anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
508 513anti-parallel
Strand 3
A
516 521anti-parallel
Strand 4
A
555 560anti-parallel
Strand 5
A
537 541anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 299first strand
Strand 2
B
274 277parallel
Strand 3
B
217 220parallel
Strand 4
B
108 113parallel
Strand 5
B
61 64parallel
Strand 6
B
24 28parallel
Strand 7
B
391 395parallel
Strand 8
B
330 332parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 69first strand
Strand 2
B
81 85anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
177 182anti-parallel
Strand 3
B
167 171anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
499 500first strand
Strand 2
B
508 513anti-parallel
Strand 3
B
516 521anti-parallel
Strand 4
B
555 560anti-parallel
Strand 5
B
537 541anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il